Pseudomonas lurida: A7318_19065
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Entry
A7318_19065 CDS
T04730
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pfx
Pseudomonas lurida
Pathway
pfx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7318_19065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfx03019
]
A7318_19065
03400 DNA repair and recombination proteins [BR:
pfx03400
]
A7318_19065
Enzymes [BR:
pfx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A7318_19065
Messenger RNA biogenesis [BR:
pfx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A7318_19065
DNA repair and recombination proteins [BR:
pfx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A7318_19065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_40
HTH_23
GerE
Motif
Other DBs
NCBI-ProteinID:
AOE80597
LinkDB
All DBs
Position
complement(4230632..4232758)
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLA
VVVSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRT
REEIVERLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VDEVAAFLCEQGYPALPYHAGLPNETRSAHQKRFLNEEGLIMVATIAFGMGIDKSNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMVYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPEPCGHCDNCVDGVQTWDATEPARQGLSAIYRTG
QRYGVGHLVDVLLGKDNEKVRSFGHEKLSVYGVGKARAEGEWRSLFRQMVARGLVDIDIE
GFGGLRLNDSCRPLLKGEVSLELRRDLKPQTTAKSSTSQASQLVRGEEREQWEALRTLRR
KLAQEHSVPPYVIFPDSTLLEMLREQPTSMAEMARVSGVGARKLERYGQAFLEVLGGQAE
APKEVADIRHELISLARAGMTPIQIAGQLQCSEKNVYTLLAESIGKQQLSLEQALDLPED
LLGEIQDAFLDGEGELPPVAEIAPLFTGRVPEGVLYCVRAALQSEFEI
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcaggcacaacgcgtcctcaaggacatcttcggctacgacagttttcgtggc
cgccagggtgcgatcattgagcgcgtggccagtggcggtgacgcactggtactgatgcct
accggcggcggcaagtcattgtgcttccaggtgccggcgctgttgcgcaacggcctggcc
gtggtggtgtcgcctttgatcgcgttgatggacgaccaggtcgcgaccctcgaagaactc
ggtgttgccgcggcgtccttgaactccaccctcagtgccgagcagcaacgcgacctggct
gcgcggatcaagcgcggtgaagtgaagatgctctacctggcccccgagcgcctggtgcag
ccgcgcatgctggcctttttgcagagcttggaaatcgccctgttcgccatcgatgaagcc
cactgcgtatcgcaatggggccatgatttccgccgcgaatatttgcagcttggccagttg
gcggagctgtttcccgatgtgccgcgcatcgctctgacggccactgccgacaagcgcacc
cgcgaagaaatcgtcgagcgcctgcatctgcagaacgccgagcgcttcctgtcgagtttc
gaccggccgaacattttctaccgcatcgtgcccaaggagcagccgcgcaagcagttgctg
gcgttcctctccgagcggcgcagcgatgcggggattgtctattgcctgtcgcgcaagaag
gtcgacgaagtggcggcgttcctgtgcgagcagggctacccggcgctgccttatcacgcc
ggcctgcccaacgaaacgcgttcggctcaccagaagcgcttcctcaacgaggaaggcctg
atcatggtggccaccattgcgttcggcatgggcatcgacaagtccaacgtgcgcttcgtc
gcgcacatggacctgcccaagtccctcgaggcgtactaccaggaaaccgggcgtgccggc
cgtgatggtctgcctgcggatgcctggatggtctacggcctgcaggatgtggtgatgctc
aagcagatgctgcagaactccgagggcgatgagcgtcataagcgtctggagcagcacaag
ctcgacgcgatgctttcgctgtgcgaggagactcgttgccgtcgccagaccttgctggcg
tatttcgacgaagacatgcctgagccttgtggccattgcgacaactgcgtcgacggcgtg
cagacctgggacgccactgagccggcgcgccaggggttgtctgccatctatcgcacgggc
cagcgttatggcgtgggccatctggtggacgtattgctgggcaaggacaacgagaaagtc
cgcagcttcggccacgagaaactctcggtctacggcgtcggcaaggcccgcgcagaaggc
gagtggcgctcgctgttccggcagatggttgcgcgtgggttggtagatatcgatatcgaa
ggctttggcggcctgcgcctgaacgacagctgccggccgttgctcaagggtgaggtcagc
ctggagttgcgccgcgacctcaagccgcagaccaccgccaagagcagcaccagccaggcc
agccaactggtgcgtggcgaggagcgtgaacagtgggaagcgttgcgcaccctgcggcgc
aaactggcgcaggaacacagcgtgccgccttacgttattttccctgactccacgctgctg
gagatgctgcgcgagcaacccaccagcatggccgagatggcgcgggtcagcggcgtgggc
gcgcgcaagctggagcgttacggccaggccttcctcgaagtcctcggcggccaggccgaa
gcgccgaaggaagtcgccgatattcgccacgagctgatcagcctggcacgcgccggcatg
accccgatccagatcgccggtcagttgcagtgttcggagaagaacgtctacaccttgctc
gctgaatcgatcggcaagcagcagctgtcgctggagcaggcccttgatctgccagaggat
ctgctcggggaaatccaggacgcgttcctcgacggagagggcgaattgccaccggtggcg
gagattgcgccgctgtttaccgggcgcgtacctgagggtgtgttgtattgcgtgcgggcg
gctttgcagtctgaattcgagatttag
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integrated database retrieval system
