Pseudomonas lurida: A7318_19445
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Entry
A7318_19445 CDS
T04730
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pfx
Pseudomonas lurida
Brite
KEGG Orthology (KO) [BR:
pfx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfx03019
]
A7318_19445
Enzymes [BR:
pfx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A7318_19445
Messenger RNA biogenesis [BR:
pfx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A7318_19445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
nSTAND3
AAA_25
AAA_22
NACHT
T2SSE
ResIII
ABC_tran
SLFN-g3_helicase
NleF_casp_inhib
Motif
Other DBs
NCBI-ProteinID:
AOE80670
UniProt:
A0A5E6MJH5
LinkDB
All DBs
Position
complement(4305671..4309582)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQAPTIDQLLKNLDHAMLADRHRLRRQLLELRKKPDEEKLAQWVARMQASCAQVTARR
ASLPVIRYDDSLPIAAKRDEIKEALNKHQVLIIAGETGSGKTTQLPKICLEIGRGQFGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVDTWYRPLTLEQDEEGNRVDDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLYS
EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDPDSDFAGLVNLWRGFEEQRQELTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLTVNKEPADFPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPIDPVVSRELFIREGLVRGEIQSRAKCLTANQQLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYKVNSQKDPQLLIMREEDVLARE
ASEVTAAHYPDTLHLGDLELALSYHFEPNHPRDGVTLRVPAPLLPALPPERLEWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRIEFGQGSLPQALGRELLRMTGARVSDEA
WAEAAQQVESHLKMNLEVVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
AKVFAAVAEKTQQKIAGLSMTVYPALVEDNGTVKEGRFSTAAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLMYRELGRIDALVEDILLASLDTCVLEGEASLPRDGAGLAAL
AERKRGSWTEHAERLARLTLEVLKLWHGLQKRFKGKIDLAQAVALNDIKQQLSNLVYPGF
VRETPAQWFKELPRYLKAIELRLEKLPSQVQKDRVWSGELGGLWTQYENRLKKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSLVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccaagcgcccactatcgaccaactgctcaaaaacctcgatcacgccatgctc
gccgaccgccaccgcttgcgtcggcagctgcttgagctgcgcaagaagcccgacgaggaa
aagctggcgcagtgggtcgcgcgcatgcaggcgtcctgtgcccaggtcacggcgcggcgt
gccagcctgccggtgattcgctacgacgacagcctgccgattgcggccaagcgcgatgag
atcaaagaggcactgaacaagcaccaggtgctgatcattgccggtgagaccggttcgggt
aaaaccacccagttgccgaagatctgcctggaaatcggtcgtggtcagttcggcctgatc
ggtcacacccagccacgccgtatcgccgcacgcagcgtggccagccgggttgccgaggag
ctggcgacaccgcttggcgcgctggtcggctatcaggtgcgcttcgaagaccaaagcgac
tccaacacgctgatcaagctgatgaccgacggtatcctgctggcggaaacccagaacgac
cgctacctggaacgctacgacacgatcatcgttgacgaagcccacgaacgcagcctgaac
atcgacttcctgctgggctacctgaaaaccctgctgccgcgtcgcccggacctgaaggtc
atcatcacctcggcgaccatcgacctggagcgcttctccaagcatttcgacgatgcgccc
attgtggaagtgtcgggccgtaccttcccggtggacacctggtaccgaccgctgaccctg
gagcaggacgaagagggcaaccgcgtcgatgatgacctgacggttgaccaggcgatcctt
gccaccctcgacgaaatcgcggcttatgagcgcagcgagcgacgcagccccggcgatgtg
ctggtgtttttgccgggtgagcgcgagatccgcgacgccgccgacatgctgcgcaaggcc
cagctcaagcacaccgagatcctgccgctgtacgcacgcctgtcgccggccgaacagcag
cgcattttccagtcccatccgggccggcgcgtggtgctggcgaccaacgtcgcggagacc
tcgctgaccgtgccgggcattcgttatgtgatcgacagcggtaccgcgcgcatcagccgc
tacagctaccgcgccaaggtgcagcgcctgccgatcgaggcgatttcccaggccagcgcc
aatcagcgtaaaggccgctgtggtcgggtcgagccggggatttgcatccgcttgtacagc
gaggaagattttatcggccgtccggagttcaccgacccggaaattctgcgcaccaacctc
gctgccgtgatcctgcagatgctgcacctgcgccttggcgaaatcaccgacttcccgttt
atcgagccgccggacggcaaggccatcagcgacggtttcaacctgctgcaagagctgtcg
gcggttgaccgcaacagccagctcaccccgctgggccgtcagttggcgcgcctgccggta
gacccgcgcatgggccgcatgttgctcgaagcggccaagctcggcagcctgcaggaagtg
ctgatcgtcgccagcgccatgtcgatccaggacccacgcgagcgcccgccggagcgtcaa
caggccgccgaccaggctcatgctcaatggaaagacccggattcggatttcgccggcttg
gtcaatctatggcgcggtttcgaagagcagcgccaggaactgacggccagcccgctgcgt
aactggtgtcgcaagaacttcctcaattatctgcgcctgcgcgagtggcgtgattcccat
cgtcagttgagcctgatctgccgcgacatgcagttgacggtcaacaaagagccggcggac
ttcccgaaactgcacaaggcggtgttgtccggcctgctcagccagatcggccagaagact
gaagacggcgattaccttggcgcgcgtcaacggcgtttctggattcacccctcgtcgggc
atcggcaagaaacgtccgcaatggttgatgaccgccgagttggtggagaccaccaagctg
tatgcgcgcatggtggccaagatcgacgccgactggatcgagccgctggccgggcacctg
atcaagaaaaaccactttgagccccactgggagaagaaacgcggccaggtcgttgccttt
gagcagatcaccctgttcgggctgatcgtggtcggccgtcgcccggtgcattacgggccg
attgacccggtggtgtcccgcgagttgtttatccgcgaaggcctggtgcgtggcgagatc
caatcgcgggctaaatgcctcaccgccaaccagcagttgctggagcaactcgacgaactg
gaagccaaggcgcgccgtcgcgatatcctggcggatgaagaaacgctgttcgccttctac
gatgcgcgtttgccggcggagattcaccagaccgcgaccttcgacagctggtacaaggtc
aacagccagaaagacccgcaattgctgatcatgcgcgaggaagacgtgctggcccgcgag
gccagtgaagtcaccgccgcgcattacccggacaccctgcacctgggcgacctggaactg
gcgttgagttaccacttcgaacccaaccacccgcgtgacggcgtgaccctgcgcgtgccg
gcaccgttgctgccggcgctgccgcccgagcgcctggagtggttggtgcccggggtgatc
gaagccaagtgcatcgccctggtgcgcaacctgcccaaggcgctgcgcaagaatttcgtg
ccggtgccggacttcgtcaaggccgccctgcaacgcatcgaattcggccagggctctttg
ccccaggcgctgggccgcgagttgctgcgcatgaccggggcacgggtcagcgatgaggcc
tgggccgaagccgcgcagcaggtcgaaagccacctgaagatgaacctggaagtggtcgac
ggccagggtaagttcctcggcgaaggccgcgacctggctgagctgacggcgcggtttgcc
gaggccagccaggccgcgctggccgtgccgcagactgcgaaaagccaacagccggtggaa
gccaaggtatttgcggcggtggccgaaaagacgcagcagaagatcgccgggctgtcgatg
acggtgtacccggcgctggtggaagacaatggcacggtcaaggaagggcgcttctccacc
gccgccgaggctgagttccagcatcgccgtgcgttgcagcgcctgctgatgcagcaactg
gcggaaccggcgaaattcctgcgcggcaaattgccgggcctgaccgaactggggctgatg
taccgcgaactggggcgtatcgatgcgctggtggaggacattctgctggccagcctcgac
acgtgcgtgttggaaggcgaagccagcctgccgcgtgacggcgccggtttggcggctttg
gccgagcgcaagcgcggcagttggacagaacacgccgaacggctggcgcgcctgaccctg
gaggtgctgaaactctggcacggcttgcaaaaacgcttcaaaggcaagatcgacctggcc
caggccgtggccttgaacgacatcaagcagcagttgagcaacctggtctacccagggttt
gtgcgggaaacgccggcgcagtggttcaaggagttgccgcgttacctcaaggccatcgag
ttgcgcctggagaaattgcccagccaggtgcaaaaagaccgggtgtggagcggcgaactg
ggcggtctgtggacgcagtatgaaaaccgtttgaaaaaacatgcccaggaaggcaagcgc
gatccccagctggagctgtatcgctggtggttggaggaatatcgggtgtcattgtttgcc
cagcagttggggaccaaggtgccgatttccgacaagcgcctgagcaagcaatggagcctg
gtagaggcctga
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