Pseudomonas lurida: A7318_24710
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Entry
A7318_24710 CDS
T04730
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pfx
Pseudomonas lurida
Pathway
pfx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pfx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A7318_24710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfx03021
]
A7318_24710
Transcription machinery [BR:
pfx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A7318_24710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AOE81672
UniProt:
A0A5E6X5N6
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All DBs
Position
5444654..5446504
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEA
APDKDSLMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAE
VPPPVDAKAAKADDDSEDDDAEASGDDEDEVESGPDPIIAAQRFGAVSDQMEITRKALKK
HGRGNKQAIAELLALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDARM
PRADFLRQFPGNEVDESWTDALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGLTIAE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcgttctcggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatcca
gagcaggtggaagacatcatccgcatgattaacgacatggggatcaacgtattcgaagct
gcgccagataaggattcccttatgctggcggacgccgataccgacgaggctgccgctgaa
gaagctgctgccgcgctggctgctgtggagaccgatatcggtcgtaccaccgaccctgtg
cgcatgtatatgcgtgaaatgggtaccgtcgagctgctgacacgcgaaggcgaaatcgaa
atcgccaagcgtatcgaagagggcatccgtgaagtgatgggcgcaatcgcgcacttccct
ggcacggttgaccatattctctccgagtacacccgcgtcaccaccgaaggtggtcgcctg
tccgacgtcctgagtggctacatcgacccggacgacggcatcgcgccgcctgccgccgaa
gtgccgccgccggtcgatgccaaggctgcaaaagcggacgacgactctgaagacgacgat
gctgaagccagcggcgacgatgaagatgaagtcgaaagcggtccagacccgatcatcgct
gcccagcgtttcggtgcggtttccgatcaaatggaaatcacccgcaaggccctgaaaaag
cacggtcgcggcaacaagcaggcgattgccgagctgttggccctggctgagctgttcatg
ccgatcaagctggtaccgaagcaattcgaaggcctggtcgagcgtgttcgcagcgccctt
gagcgtctgcgtgcgcaagagcgtgcgatcatgcagctctgtgtccgtgatgcccgcatg
ccgcgtgccgacttcctgcgccagttcccaggcaacgaagtagacgaaagctggaccgac
gcactggccaagggcaaggcgaaatacgccgaagccattggtcgcctgcagcccgacatc
atccgctgccagcagaagctgaccgcgcttgagaccgagaccggtctgacgatcgccgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggttgaagccaacttgcgtctggtgatctccatcgccaagaagtacaccaaccgt
ggcctgcaattcctcgatctgatccaggaaggcaacatcggcttgatgaaggctgtggac
aagttcgaataccgtcgcggttacaagttctcgacgtatgccacctggtggatccgtcag
gcgatcactcgctcgatcgccgaccaggcccgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccggcagatgttgcaggaaatgggtcgtgaa
ccgaccccggaagagttgggcgaacgcatggaaatgcctgaggataaaatccgcaaggta
ttgaagatcgctaaagagccgatctccatggaaaccccgatcggtgatgacgaagactcc
catctgggtgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccactgtt
gagagccttaaagaagcgactcgtgacgtactgtccggcctcactgcccgtgaagccaag
gtactgcggatgcgtttcggcatcgacatgaataccgaccacacccttgaggaagtcggt
aagcagtttgacgtaacccgcgagcggatccgtcagatcgaagccaaggcgctgcgcaag
ttgcgccacccgacgcgaagcgagcatctgcgctccttcctcgacgagtga
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