Pestalotiopsis fici: PFICI_05320
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Entry
PFICI_05320 CDS
T04924
Name
(RefSeq) ATP-dependent RNA helicase DBP2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PFICI_05320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfy03041
]
PFICI_05320
03009 Ribosome biogenesis [BR:
pfy03009
]
PFICI_05320
Enzymes [BR:
pfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFICI_05320
Spliceosome [BR:
pfy03041
]
Complex A
U1 snRNP components
U1 related factors
PFICI_05320
Complex B
PFICI_05320
Ribosome biogenesis [BR:
pfy03009
]
Eukaryotic type
Pre-60S particles
Helicases
PFICI_05320
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Glyoxalase_3
Utp25_C
P-loop_SecA
DUF2443
Motif
Other DBs
NCBI-GeneID:
19270333
NCBI-ProteinID:
XP_007832092
UniProt:
W3XBN9
LinkDB
All DBs
Position
Unknown
AA seq
546 aa
AA seq
DB search
MSYGGGYGGGGGYGGGRGGGGGGYSNGYDKYGSGGRDHGGYGGSNGYSNGHGGGHGGGGD
RMSNLGAGLQKQNWDLSTMPKFEKSFYKEDDAVANRSQQEVDRFRRDHKMTVHGSDVPKP
VETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA
IVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGRSSRIRNTCVYGGVPRGPQIR
DLTKGVEVCIATPGRLIDMVESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPD
RQTLMWSATWPKEVRAMAADFLTDFIQVNIGSLDLSANHRITQIVEVVTESEKRDKMIKH
LEKIMDDKANKCLIFVGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLDQFKNGKS
PIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNSKQ
ARDLVNVLQEAKQQIDPRLQEMVRYGGGGGGRYGGRGWGRGGHRGGRGGGGDRSGANDQP
LGNRRW
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacggaggtggatacggcggcggcggcggctacggcggcggtcgcggtggtggt
ggtggtggctactcgaacggctacgacaagtatggctctggcggtcgcgaccacggtggt
tacggtggcagcaacggctactccaacggccatggtggcggccacggcggcggtggtgac
agaatgtctaaccttggtgcaggtcttcagaagcaaaactgggatctcagcacgatgccc
aagttcgagaagtctttctacaaggaggacgatgcagttgccaaccgatcccaacaagaa
gttgaccgattccgcagagaccacaagatgacagttcacggtagtgatgtgcccaagcct
gtcgagacctttgacgaggctggtttccctcgctatgtcatggatgaggtcaaggcccag
ggtttcccggcccccaccgctattcagtcgcaaggctggcccatggccctttcgggtcgc
gatgtcgttggtattgccgagactggttccggaaagacacttacttactgtcttcccgct
atcgtccacatcaacgctcagcccctcctggcacctggcgatggccctatcgtcctggtt
ctggctcctactcgtgagctggcagttcagatccagcaggagattaccaagttcggtcgc
tcctcccgcatccgaaacacctgtgtttacggtggtgttccccgtggtccccagattcgc
gacctgaccaagggtgttgaggtctgcattgcgactcccggccgattgatcgacatggtg
gagagcggcaagactaacctgcgacgtgtgacttatctcgtcctcgatgaggccgatcgt
atgcttgatatgggtttcgagccccaaatcagaaagatcatcagccagattcgccctgac
agacagacgctcatgtggtccgccacatggcccaaggaggtccgagccatggctgctgac
ttcttgactgactttattcaagtcaacattggttctctggacctgtctgctaaccaccgt
atcactcaaattgtcgaggtcgttacggaatcggagaagcgtgacaagatgatcaagcac
ctcgagaagatcatggacgacaaggccaataagtgtctcatctttgttggtactaagcgc
gttgccgacgacattacccgattcctccgccaggatggctggccggcactttccattcac
ggtgacaagcagcaaaacgagcgtgactgggtccttgaccagttcaagaacggcaagagc
cccatcatggttgccaccgatgtggcttcgcgtggtattgatgtccgcaacatcactcac
gtgttcaactatgactaccccaacaactcggaggattacatccaccgtattggtcgtact
ggtcgtgctggtgccatgggtactgccattaccctgtttactactgataactccaagcaa
gctcgtgacctggtgaacgttctgcaagaagctaagcagcagattgatcctcgcctgcag
gagatggtccgctacggcggtggcggcggtggtcgctacggcggcagaggttggggccgc
ggtggccacagaggtggccgtggtggtggtggtgaccgaagcggtgccaatgaccaacct
cttggcaaccgccgctggtaa
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