Pestalotiopsis fici: PFICI_06659
Help
Entry
PFICI_06659 CDS
T04924
Name
(RefSeq) Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PFICI_06659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfy03041
]
PFICI_06659
Enzymes [BR:
pfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFICI_06659
Spliceosome [BR:
pfy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PFICI_06659
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
Cas3-like_C_2
nSTAND_NTPase5
nSTAND3
T2SSE
AAA_30
ABC_tran
SRP54
PhoH
OB_RNR_1st
AAA_23
Motif
Other DBs
NCBI-GeneID:
19271672
NCBI-ProteinID:
XP_007833431
UniProt:
W3X8C0
LinkDB
All DBs
Position
Unknown
AA seq
1018 aa
AA seq
DB search
MSSKKYALVPMDDDEVGPQKVEKSKHKSKHRHREDRDRNRDRDRERDRESSRRKQERSRS
PRDSRSHKSRSYRRHDRDDADDRWGDQEPSSDEEEPPADDQPEYQESASKRVKLSHDQKD
QDQEDDDADLSDTTRDRKEAEAFAKRLRERDDGRTKKIVEDRSKGGKVQDERRRLAEDEA
ARRAAMPDLRERSRQDYLKKREAERLALLRKQVAEETAELRSGMRLSDREKAEFAKNREI
LRLAEERLRIDDHRDGYYMPEDYITEKGKIDKKKKEDALYKRYVEKDEYGQEKFVTEHEE
WEREQAQKAKAQINRAEREYEGDYELVLDEEQYISWNLDSTMAGEGKQLTKEQQFLAAQI
DAAEKKALSIQETRKSLPIYAYRDEFIAAINEHQILVIVGETGSGKTTQLPQYLHEAGFT
KNGQKVGCTQPRRVAAMSVAARVADEMGVKVGNEVGYSIRFEDNTSDKTILKYMTDGMLL
REFMTEPDLAGYSALMIDEAHERTVHTDILLALVKDLSRERPDLKLLISSATMNAEKFAK
YFDDAPIFNIPGRRYPVDIYYTPAPEANYLAAAITTVFQIHTSQGKGDILVFLTGQDEID
AAEQEITETAKKLGNRVKELIVCPIYANLPSELQSKIFEPTPENARKVVLATNIAETSLT
IDGIVYVIDPGYVKENVFNPATGMSNLVVVPCSRASANQRSGRAGRVGPGKCFRLYTKYA
YMSEMDESTTPEIQRTNLNSIVLLLKSLGINNLLDFEFMDPPPTESLIGALNQLFALQAL
NHKGELTKVGRQMAEFPTEPMLAKAVLAADKFGCVEEVLSVVAMLSEASALFFRPKDKKI
HADSARNRFTVKEGGDHLTLLNIWNQWVDSDFSPVWSKENFLQQRSLTRARDVRDQLAKL
CDRVEVSPSTCGASNIDPIKKALTAGFFPNAARLQRSGDAYRTVKNSATVYIHPSSVLMN
ADPPERMVIYFELVQTTKEYMRSCLPIKPQWLTEVAPHFHKKSDVDEMDEKKMPKHRN
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcaagaaatacgccctcgtcccaatggacgatgatgaggtcggtccacagaag
gtcgagaaaagtaaacacaagagcaaacaccgacaccgcgaggatcgcgatcgaaaccgg
gacagagacagagagagggatcgggagtcttccaggcggaaacaggaacggagccgctcg
ccgcgtgactcgcgcagccacaaatcgaggtcctaccgtcgtcacgaccgcgacgacgct
gatgaccggtggggtgaccaggagccatcgtccgatgaagaagaacctcccgctgacgac
cagcccgagtaccaggaatcggcatccaagcgagtgaagctcagtcacgatcaaaaggat
caggatcaggaagatgacgatgccgacctgtcggacacgactcgcgaccggaaggaggct
gaggcgtttgcaaagcgccttcgggagcgcgacgacgggcgcaccaagaaaatcgtcgaa
gaccgctccaagggcggcaaggttcaggatgaacgacgtcggctcgccgaagatgaagcc
gcgaggcgcgccgccatgccggatctgcgcgagagatcaagacaggactacttgaagaag
cgagaagccgagcgcctggcactgttgcgtaaacaagtcgctgaagagaccgccgagctg
cgcagcggcatgcgcctgagtgacagagaaaaggccgaatttgccaaaaaccgagaaatc
ctgcgacttgccgaagaacgcctgcgcatcgacgaccaccgggatggctactacatgcca
gaagattacattacggaaaagggaaagatagacaagaagaagaaagaggacgccctatac
aagcgatatgtcgaaaaggacgagtatggccaggagaagtttgtcacagagcatgaagaa
tgggaaagggaacaagctcaaaaagccaaggcgcaaatcaacagagcggagcgcgagtat
gaaggcgattacgaactagttctggacgaagaacaatacatcagctggaacctcgactcg
accatggccggtgaaggtaaacagctaacgaaggagcaacaatttctggccgcgcaaata
gatgctgccgaaaagaaggcactttctattcaagaaaccagaaaaagtctccccatctac
gcctacagagacgagtttattgcggccatcaacgaacaccagattcttgtcattgtagga
gagacgggcagtggtaaaacaacacagctgccacagtacctccacgaagcaggtttcacc
aagaatggccagaaggttggctgcacccaaccccgacgagtggccgccatgagtgttgct
gctcgtgtagccgacgaaatgggcgtcaaagtcggaaacgaggttggatattccatccgt
ttcgaagacaacactagcgacaagacgatcctaaagtacatgacggatggtatgttactt
cgagaattcatgacggagcccgaccttgctggctactcggcattgatgattgacgaggcc
cacgaacgtaccgtgcacacggatattctgctggcgctggtcaaggatctttcgcgagaa
cgcccagacctcaagctgctgatctcttcggcgaccatgaacgcggagaaattcgccaag
tatttcgatgacgcaccaattttcaatattcccggtcgaagatacccagttgatatctac
tacacgcctgcccctgaggcaaattatctagctgcagccatcaccacggtattccagatt
cacacatctcaaggaaaaggagatatacttgttttcctgacaggacaggacgagattgat
gcggctgagcaagaaatcacagaaacggcgaagaaactgggaaatcgagtaaaagagcta
attgtttgcccgatctacgccaatttgccctcggagctgcaatccaagatctttgagcct
accccggaaaacgccaggaaagttgttcttgcaaccaatattgcagagaccagtttgacc
attgacggcattgtttatgtcatagatccaggatatgtcaaggaaaatgttttcaacccc
gcgactggcatgtccaacttggtcgtggtgccttgctcgcgtgcttcagccaaccagcga
agtggcagagctggacgtgttggtcctggcaaatgctttcgtctgtacacaaaatacgca
tacatgagcgaaatggacgaatcaaccacgccagagatccaacggacaaacctcaatagt
atcgtgctccttctcaagtcacttggtatcaacaatttgctcgactttgagttcatggac
cctccaccgacagaatccctcattggcgccttgaaccaattgtttgcactccaggctcta
aatcacaagggagaacttacgaaggtgggcaggcaaatggctgaatttcctacggagcct
atgctggcgaaagctgtgctcgcagccgacaaatttggttgtgtagaagaagtgctttct
gttgtggccatgctcagtgaggcctcggcgttattcttccgacccaaggacaagaaaatc
cacgcagacagtgctcgcaacaggtttacggtaaaggagggcggtgatcatcttacccta
ctcaacatttggaaccagtgggttgacagcgacttctcgccagtgtggtcgaaggagaat
ttcctccagcaaagatctctcacgcgagctcgggatgtcagggaccagctggcaaagctc
tgtgatcgagtcgaagtctctccatcgacatgcggtgccagcaatatcgacccaatcaag
aaggcattgaccgctggattctttcccaatgcagcgcgtttgcaacgcagcggagatgcc
taccggacggtcaagaatagtgccacagtctacatacatcccagctctgttctgatgaat
gcagaccctccggagcgcatggtcatttactttgaactggtacagacaacaaaggagtac
atgcgctcctgcctgcctatcaagcctcagtggctgactgaagtggcgccccatttccat
aaaaagtcagatgttgacgagatggatgagaagaagatgccaaagcatcgtaattag
DBGET
integrated database retrieval system
