Pestalotiopsis fici: PFICI_07278
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Entry
PFICI_07278 CDS
T04924
Name
(RefSeq) ATP-dependent RNA helicase dbp-5
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03013
Nucleocytoplasmic transport
pfy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PFICI_07278
03015 mRNA surveillance pathway
PFICI_07278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfy03019
]
PFICI_07278
Enzymes [BR:
pfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PFICI_07278
Messenger RNA biogenesis [BR:
pfy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PFICI_07278
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
RnfC_N
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
19272291
NCBI-ProteinID:
XP_007834050
UniProt:
W3XAV0
LinkDB
All DBs
Position
Unknown
AA seq
465 aa
AA seq
DB search
MSDLASRITKPEGDVAAVPEGADGAGDVAGTSNLQQVDYDVEVSLNQLQQDQDHPLGSAK
SFEELGLPDAVLKGLLALQFHKPSKVQEKALPLMLADPPQNMIAQSQSGTGKTAAFVTTV
LSRVDMSNPTQPQALILAPTRELARQIQGVVQHIGQFCEGLVVEAAVPGNIARDQKVEAN
VICATPGTVMDLIRRRQIDASQFKVLVIDEADNMLDQQGLGDQCARVKNMIPKTVQILLF
SATFPDVVHKYATKFAPNANQIKLKVQELTVRGISQMFMDCPSEADKYGILCQLYGLLTI
GSSIIFVKTRESANEIQKRMTEDGHKVTALHGAFEGAARDALIDEFRSGRTKVLITTNVL
ARGIDVSSVNMVINYDVPMKGPGDREPDAETYLHRIGRTGRFGRVGVSITFIFDKKSFEA
LQNITERYEIDLIRLVPDDWDTTEAEVQRVIKSSRAQAGFNPSAQ
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatcttgcaagtcgcatcacaaagcccgagggcgatgttgccgcagtccctgaa
ggcgccgacggcgctggcgatgtcgctggcacctccaacttgcagcaggtggattacgat
gtcgaggtttcactcaaccagctgcagcaagatcaggatcaccctctgggctctgccaag
tctttcgaggagctcggactgcccgacgctgtcctcaaaggtctcctcgctcttcagttc
cacaagccctcgaaggtgcaagagaaggccctccctctcatgttagcggacccgccccaa
aacatgattgctcagtcgcagtctggtactggaaagacggctgccttcgtcacaacagtt
ctttctcgcgtggacatgagcaatccaacccaaccacaagctctgatcttggcgcccacc
cgtgagctggcccgccagatccagggtgttgttcagcacattggccagttctgcgagggt
ctggttgtcgaggctgctgttcctggtaacattgccagggaccagaaggttgaagccaat
gtcatctgcgccacacctggaaccgtcatggatctcatcagaagaagacagatcgatgct
tcgcagttcaaggttctcgttattgacgaggccgacaacatgctggatcagcagggtctc
ggtgaccagtgtgctcgtgttaagaacatgatccccaagaccgttcagatcctcctcttt
tccgctaccttccccgatgttgtacacaaatacgccaccaagtttgcacccaatgccaac
cagatcaagctcaaggtacaagagcttacggtccgcggcatctcgcagatgttcatggac
tgcccatcggaagcagacaagtatggcatcttgtgtcaactatacggtctcctgaccatt
ggctcgtccattatttttgtgaagactcgtgagagcgccaacgaaattcaaaagcgcatg
actgaggatggacacaaggtgacggctcttcatggtgcatttgagggtgctgcccgagac
gctctcattgatgagtttagaagcggccgcaccaaggttctcatcaccaccaatgttctc
gctcgaggtattgatgtttcgagtgtcaacatggtcatcaactacgatgtcccgatgaag
ggccccggtgaccgagagccggatgctgagacctacctgcaccgaattggccgaacgggc
cgtttcggccgtgtaggtgtcagtatcaccttcatcttcgacaagaagagtttcgaagca
ttgcaaaacattaccgagagatatgagattgatctgatccgacttgttccggatgactgg
gacacgacagaggccgaggtgcagcgtgtaatcaaatcgagtcgggcacaggctggattc
aatccttcggctcagtag
DBGET
integrated database retrieval system
