Pestalotiopsis fici: PFICI_08604
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Entry
PFICI_08604 CDS
T04924
Name
(RefSeq) hypothetical protein
KO
K12589
exosome complex component RRP42
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFICI_08604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfy03019
]
PFICI_08604
Messenger RNA biogenesis [BR:
pfy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PFICI_08604
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PFICI_08604
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
19273617
NCBI-ProteinID:
XP_007835376
UniProt:
W3X0T8
LinkDB
All DBs
Position
Unknown
AA seq
403 aa
AA seq
DB search
MATTQHLLLSPAELAYLHSTLSLHPPIRPDGRTASQFRPLTAETGILPGTNGSARICFAD
GTEAIVGVKAEVERTRISPYEDANGNMRDGGSSSSSRTERNTSSKSGEAKDDEDQEAAET
EENDTVKIKGSKDWVEVSVEVPGYRDDDSATVFLSTMLSEALLADGEFTRRLWINRRFHW
KMYLDVILISPPLSYPLPLLSLTTHLAILSTRLPRLKSEADEDPMFDDDWDASKYIYPRT
GSESRSTSMPPITLLVMVVGDNIIFDPSKEELAVADTALAVSVGEGQVQQDKNNDAAMDV
DDKSQPSRKLRLLSVRMIDPPSRLTPPGVPNSVNASAWGQGGGSAAQKNPDARQAETADV
AGVWKAPRGGIKPAVLSAMVAKVLEKGGVADEVLDGLDGVELS
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgacacagcacctcctcctctcgcccgccgagctcgcctatcttcacagcacc
ctcagtctgcacccaccgatacggccagacggtcgcacggcgtcgcaattccgaccgctg
acggccgagacgggcattctgcccggcaccaatggctccgcgcgcatctgtttcgccgac
ggtaccgaggccattgtcggcgtcaaggccgaggtcgagcggacccgcatctcgccgtac
gaggacgccaatggcaacatgagagatggcggcagcagcagcagcagccggacagagaga
aataccagcagtaagagtggagaggccaaagacgacgaggatcaggaagcggccgagacg
gaggagaatgatacagtcaagatcaagggatccaaggactgggtagaggtcagcgtcgag
gtcccgggctacagggacgacgatagcgccaccgtcttcctgtcgaccatgctcagcgag
gcgcttctggccgacggagagttcacgaggcggttatggatcaaccgccggtttcattgg
aagatgtaccttgacgttatcctcatctcaccacctctttcctacccgcttcccctgctc
agtctaaccacacatctcgccattctctcgacgcgcctgccgagactcaagtccgaggcc
gacgaggatcccatgttcgacgatgactgggacgcctcaaagtacatttacccgcgcact
ggtagcgaaagccgatccacctctatgccgcccattacgctactagtcatggtcgtcggt
gacaacatcattttcgatccgtccaaagaggagctggccgtggccgacacggcgctggcc
gtatcggtaggcgagggacaggtgcagcaggacaagaacaacgatgccgccatggacgtg
gacgacaagtcgcagccgagccgaaagctgcggctgctgtcggtccgcatgattgatccg
ccctcgagactgacgccgccgggcgtgcccaactcggtcaatgcttcggcgtggggccag
ggcggcggcagtgcggcacagaagaacccggacgcccgacaggcggaaacggcagatgtg
gctggtgtctggaaagcgcccagaggtggtatcaagccagccgtgctgagcgccatggtg
gcaaaggtgctggaaaagggcggcgttgctgacgaagtattagatggcctcgatggagta
gaactaagctaa
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