KEGG   Pestalotiopsis fici: PFICI_08608
Entry
PFICI_08608       CDS       T04924                                 
Name
(RefSeq) hypothetical protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
pfy  Pestalotiopsis fici
Pathway
pfy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pfy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PFICI_08608
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pfy03019]
    PFICI_08608
Messenger RNA biogenesis [BR:pfy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PFICI_08608
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PFICI_08608
SSDB
Motif
Pfam: LSM Hfq DJR-like_dom
Other DBs
NCBI-GeneID: 19273621
NCBI-ProteinID: XP_007835380
UniProt: W3WY49
LinkDB
Position
Unknown
AA seq 185 aa
MENLTIHDTPPPGQGTPQGQFPTQALGGRAPPPPQPQQLPPQMFTTAAQLLDLTDKKLVI
CLRDGRKLTGILRSWDQFANLVLQSTVERIYTPLQDAPEDSPVKGYYADKTHGIFLVRGE
NVLLLGEIDLDKDDDMPAGFEEKEWKVVENMIKEKRAAEKVKEKKKLKKLATLGFEGENM
GEILL
NT seq 558 nt   +upstreamnt  +downstreamnt
atggagaacctcacgatacacgacacgccgccgcctgggcagggaacgccccaaggccaa
ttcccaactcaagctctgggaggacgcgcccctccccctccccaaccccagcagctgccg
ccgcagatgtttaccactgccgcccagctgttggacttgacggataagaagctggttatc
tgcctacgcgacggaagaaagttgactggtatcctgcgaagctgggaccagtttgccaac
ctcgtcctccaatctacagttgagcggatatatacccctctacaagacgcccccgaggac
tcgcccgtcaagggctactacgctgataagacgcacggcatcttcctcgtgcgcggcgaa
aacgttctgctcctcggcgagatcgatcttgacaaggacgacgatatgcccgccggcttt
gaggagaaggagtggaaagtggtggagaacatgatcaaggagaaaagagccgccgaaaag
gtcaaggagaagaagaagctcaagaagctggccacgcttggctttgagggcgagaacatg
ggcgagatccttctctag

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