Pestalotiopsis fici: PFICI_08821
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Entry
PFICI_08821 CDS
T04924
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFICI_08821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfy03019
]
PFICI_08821
03041 Spliceosome [BR:
pfy03041
]
PFICI_08821
03009 Ribosome biogenesis [BR:
pfy03009
]
PFICI_08821
03016 Transfer RNA biogenesis [BR:
pfy03016
]
PFICI_08821
Enzymes [BR:
pfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFICI_08821
Messenger RNA biogenesis [BR:
pfy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PFICI_08821
Spliceosome [BR:
pfy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PFICI_08821
Complex C
U4/U6.U5 tri-SnRNP related factors
PFICI_08821
Ribosome biogenesis [BR:
pfy03009
]
Eukaryotic type
Pre-60S particles
Helicases
PFICI_08821
Transfer RNA biogenesis [BR:
pfy03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PFICI_08821
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
HTH_11
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
19273834
NCBI-ProteinID:
XP_007835593
UniProt:
W3WYL7
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MDDDLFDVFEDQPGKVKDEPQSSPPAKSKNKKNKKKRKAVEALDNGDIETETRSAPEPDV
DMADVEPTSAEDEADDIEEDGQTVSEGHQDIKRRKKEEKAEPVITDSFQTAESRELAAAS
GFAKQDEESSLVLSHNIQHQVALPPDLDYEYVPLSEHKPPADPARSWPFTLDPFQRLSIS
SIERDESVLVSAHTSAGKTVVAEYAIAQCLKKNTRVIYTSPIKALSNQKYREFNEAFGDV
GLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEET
IILLPDKVRYVFLSATIPNAFQFAEWIAKIHRQACHVVYTDFRPTPLQNYFFPSGGNGIF
LVVDEKSVFRENNFQKTMQMIEERKASEANDVDAKMRGRGNKKKTFKGGKDDANADIQKI
VKMVMSKGFNPVIVFNFSKRECEMMALFTSKFSFNDDSEKAMTRKVFSSAIESLSEADRE
LPQIQNILPLLEKGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVV
FTQVKKFDGTTRRPLTSSEYIQMAGRAGRRGLDERGIVIMMIDDKLEPETAKEIVVGQQD
RLNSAFHLGYNMVLNLLRIEAISPEFMLENCFFQFQNTASVAGLEQELMKLQKERDGMAI
PDEATIKDYHGLRQQIEAYTKDMVYVIQHPNYCLDFLQPGRLIQIQNPKTGQDFGWGVVA
NFTERRSPKFGEKSYEPQESYFVDVFLHLDPKGEDFTPLTQPPSEMPNGVLPLNGSQNSR
FEVVPCLFTCIKAISQIRVFMPKDIKNLEDIEEVRKTVLKSLSEVVRRFPDGVPILDPIE
NMGITDDSFKKLLRKIEVLESRLLANPLHGSPLLPGLWEQYSKKLALADKIKNLKKQIGK
AHSIAQLDELKSRKRVLRRLGFINDAEVVEMKARVACEISSTEGHELLLSELLFNRFFNE
LSPEIIASILSVFIFEEKVEAATLKDELQKPYSQVQAQAKIIAKVSQESKLDVNEEEYAQ
SLKWQLMETVYAWAQGKPFAEVCKMTDAYEGSLIRLFRRLEELLRQMAEAAKVMGSEELA
EKFNASLKMIRRDIVSAQSLYL
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgacctattcgatgtcttcgaggaccagcccggcaaggtcaaagatgagccc
cagtcctcgccgcccgccaagtccaagaataaaaagaacaagaagaagcgcaaggcagtc
gaggctctggacaacggcgacatcgagaccgagacacgttccgcacccgaacctgatgtg
gacatggccgacgtagagcccacctcggccgaagacgaggctgatgatatagaagaggat
ggccaaaccgtatccgagggccaccaggacatcaagcgcaggaagaaggaggagaaggca
gagccagtcattacagactcgttccagacggccgaatcgagagagcttgcagctgcatca
ggcttcgccaagcaagatgaagagtcgtctctagttctgtcccataacattcaacatcag
gtcgcactgccaccggatcttgattacgaatacgtgccgctttcggaacataaaccgcct
gccgaccctgcccggtcctggcccttcaccctcgatcctttccagcgcctatcaatttct
tccattgagagagatgagagtgttctggtctcagcccacaccagtgctggaaagactgtc
gttgcagagtatgccattgcgcaatgtctcaagaaaaatactcgtgtcatctacaccagt
cccatcaaggccctcagtaaccagaagtatcgtgaatttaacgaggcttttggtgatgtc
ggtctcatgactggtgatgtcacaatcaacccgactgctagttgtcttgttatgaccaca
gaaattctgcgatctatgctgtatcgaggttcggagattatgcgtgaagtcgcttgggtc
gtttttgacgaaatccactacatgagagacaagacgagaggtgttgtttgggaagagacc
attattctccttcctgacaaggtccgctatgtcttcctgtctgccaccattcccaacgcc
tttcaattcgcggaatggattgccaagattcacagacaggcctgccacgttgtctacacg
gatttccgtcctacgcctctgcagaattactttttcccctcgggtggaaatggtattttc
cttgttgtggacgagaagagtgttttcagagaaaacaacttccaaaagaccatgcaaatg
attgaggagagaaaggccagcgaagccaacgatgtggatgccaaaatgcgaggcaggggc
aacaagaagaagaccttcaagggaggcaaggatgatgccaatgctgatatccaaaagatt
gtcaaaatggtcatgtccaagggattcaaccctgtcattgtcttcaacttcagcaagcga
gagtgtgagatgatggcgctcttcacttccaaattcagtttcaacgatgacagtgagaag
gccatgacacgcaaggtcttctcgagcgcgatagaatcgctatcggaagccgatcgtgaa
ttgccccagatccagaatatcttgccgcttcttgaaaagggtatcggtgtgcatcattca
ggactcttgcccattttgaaggagactatcgaaattctattccaagaaggattgatcaag
gttcttttcgctaccgagaccttttcaattggcttgaacatgccggcgaagacggtcgtt
ttcacgcaagtcaaaaagtttgacggtactactaggaggccgttgacatcgtccgagtat
attcagatggctggaagagctggtcgtagagggcttgacgagcgtggaatcgtcatcatg
atgattgacgataagctcgagcccgaaactgccaaagagattgtcgttggtcagcaagat
cgcctgaactcggccttccacttgggttacaacatggtcctcaacttgctcagaattgag
gccatctctccagagttcatgttggagaactgtttcttccaattccagaacactgcaagt
gtagctggtttggagcaagagctgatgaagcttcagaaggagagagatggcatggccatt
ccggacgaagccaccatcaaggattaccacggcctgcgccaacagattgaggcatacacc
aaagatatggtctacgtcattcagcacccgaactattgcttagacttcttgcagcctggc
aggctgattcagatccagaaccccaagacaggccaggactttggctggggcgttgttgca
aacttcacagaacgtcgcagtcccaagtttggagaaaagtcatacgaaccacaagagtct
tactttgttgacgtattccttcatctcgaccccaagggcgaggactttactcccttgacc
cagccaccctctgagatgcccaacggcgtgctccccctcaacggatctcaaaactcgcgc
ttcgaggtcgtgccgtgtctattcacctgcataaaggcaatcagccagatcagagtcttt
atgcccaaggatattaagaacctagaagacattgaagaagtccgcaagactgtcctcaaa
tctctgtccgaggtggttcgccgtttccccgatggcgtacccattctggaccctattgag
aacatgggcatcacggatgactcgttcaagaagttgttgcgcaagatcgaggttctcgag
tctcgcctactggccaaccccctccacggatcgcctcttcttcccggattatgggagcaa
tactcgaagaagctggctctggctgacaagatcaagaatttgaagaagcagattggcaag
gctcatagcattgctcaactcgatgaactaaagtctcgaaagcgagtcctgcgtcgtctt
ggtttcatcaacgatgctgaagttgtcgagatgaaggctcgcgtagcttgcgaaatttcg
tcaacagaaggtcacgagttgttgttatcagagcttctgtttaaccgtttcttcaacgaa
ctcagccccgagattattgcctctatcctcagtgttttcatctttgaggaaaaggtagaa
gctgctacgctcaaggacgagctacagaagccatattctcaggtacaagctcaggccaag
atcatcgccaaggtcagccaggaaagcaagctcgatgtcaacgaggaggaatacgctcaa
tccctcaagtggcagctcatggagactgtctacgcctgggctcaaggaaagccttttgca
gaagtttgcaaaatgactgacgcctacgagggctcccttatccgtctattccgacgtctg
gaggagctgctgcgccagatggccgaggctgccaaggttatgggcagtgaagagcttgct
gagaagttcaacgccagtctcaagatgatcagacgtgacattgtctccgcacagagtttg
tatctgtaa
DBGET
integrated database retrieval system
