Pestalotiopsis fici: PFICI_08929
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Entry
PFICI_08929 CDS
T04924
Name
(RefSeq) hypothetical protein
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03020
RNA polymerase
pfy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PFICI_08929
09124 Replication and repair
03420 Nucleotide excision repair
PFICI_08929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfy03021
]
PFICI_08929
03400 DNA repair and recombination proteins [BR:
pfy03400
]
PFICI_08929
Transcription machinery [BR:
pfy03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PFICI_08929
DNA repair and recombination proteins [BR:
pfy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PFICI_08929
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_L
RNA_pol_A_bac
Calycin_like
DUF6081
Motif
Other DBs
NCBI-GeneID:
19273942
NCBI-ProteinID:
XP_007835701
UniProt:
W3X1N1
LinkDB
All DBs
Position
Unknown
AA seq
336 aa
AA seq
DB search
MDYDAMDMDMDTSGPSVKISEADSTHVNFELSNTDLAFANALRRIIMAEVPTVAIDLVEF
HVNTSVLADEFIAHRLGLIPLDSRDIKDMMMPRDCECDGHCDKCSVVLTLHAKCTGDEIM
KVHANQFEISPERVNQTVGTPVITDPDGLGPLICKLRKGQELHIECIARKGIAKEHAKWM
ATSAVGFEYDPHNKLHHLDLWYEADPAAEWPKSKYADWEDPPQEGEPFDYDALPEKFYFE
VEGVSNLDPDGIIKEGIQELQEKLARIMQGLGDSEGLDGQQYDGPQSPGGDMGGPPPWQS
EGYTTPYGGGNQSAWGGAQTAYGTTPYGNSGGSGWS
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggattacgatgcgatggacatggacatggacacttctggtccctctgtcaagatctct
gaggcagacagcacgcacgtcaactttgagctatcgaataccgatcttgcctttgcaaat
gccctgcgccgcatcatcatggccgaagttcctaccgtcgccatcgacctggtcgaattc
cacgtcaatacttcagtcttagccgacgaattcattgcgcaccgactcggtttgattccc
ctcgactccagagacatcaaggatatgatgatgcctcgggactgcgaatgcgacggacac
tgcgacaagtgcagcgttgttctgactctccatgctaagtgtactggcgacgaaattatg
aaagtgcacgccaatcagtttgagatcagccccgagcgcgtcaatcagacggttggaacc
cctgtcatcaccgaccccgatggcctcggtccgttgatttgcaaattgcgtaaaggtcaa
gagttgcacattgagtgcattgccagaaagggcattgcaaaggagcatgccaagtggatg
gctacttctgcggtcggctttgaatacgatcctcacaacaagcttcaccatctcgacctc
tggtacgaggccgatcccgcagctgaatggcccaagagcaagtatgccgactgggaggat
cccccgcaagagggcgagccatttgactacgatgctctccctgagaaattctatttcgag
gtcgagggcgttagtaacctggatccagatggcattatcaaggagggaattcaagaacta
caagaaaagcttgcccgaatcatgcagggacttggcgactccgaaggcctggatggacaa
cagtatgatggtccccagagtcctggcggcgacatgggcggccctccaccgtggcaaagc
gaaggttataccaccccatatggaggtggcaatcagagtgcctggggcggtgctcaaaca
gcatatggcaccactccttacggcaattccggtggaagcggttggagctaa
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