Pestalotiopsis fici: PFICI_11635
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Entry
PFICI_11635 CDS
T04924
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PFICI_11635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfy03041
]
PFICI_11635
03009 Ribosome biogenesis [BR:
pfy03009
]
PFICI_11635
Enzymes [BR:
pfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFICI_11635
Spliceosome [BR:
pfy03041
]
Complex A
U2 snRNP components
U2 related factors
PFICI_11635
Complex B
PFICI_11635
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
PFICI_11635
Ribosome biogenesis [BR:
pfy03009
]
Eukaryotic type
90S particles
Helicases
PFICI_11635
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
HA2_C
Motif
Other DBs
NCBI-GeneID:
19276648
NCBI-ProteinID:
XP_007838407
UniProt:
W3WQY4
LinkDB
All DBs
Position
Unknown
AA seq
481 aa
AA seq
DB search
MPGEQDIIRTCGMLAAEVPSMETLPLYGSLPKQLQDRIYHKSSNGKCIVSTNIAETSLTI
PNLVFVIDSGLAKEMLWNPRVRMNQLLRVPISRFSADQRKGRAGRISDGVCIRLYTQSAF
QTEFRQSTMPAIRSSRMESEVLALLCAGHRNLLGLDFLDSPDPENIASAIRELLDLRLIT
GSDQVNETGQVMLPRLSPTVDGRLAVQFPIAPVMFRVLESAARLECLEEMCAIVAASSQQ
NPIWVRPTEFADAADLHGPALFAHPLSDHITSLNAVQAYAKAFMEKKVDLNEWCLENFLS
RAALDSVCTLRNRLIKLAEKRWPGCIPTVADDISADEYHVRIRKALAIGLCTQSAVKKIK
TDLHMTVNYNKGGIISAESSVLYHGYDLSSMPINRASNGFPAYQWIVYDEFVSVAGKPTF
SNVTVIEPEWVCNEEFMSRDRATKKYNGQLKQPKIQANLAAARQSMADTAAATASMTQVT
I
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcctggagaacaagacatcatccgtacttgtggcatgctggcggccgaggtacccagc
atggagactcttccactgtacggatctctcccaaaacaattgcaggatcgcatctaccat
aagtccagcaatggcaaatgcatcgtcagcacgaatatcgctgaaacttcgttgactata
ccaaatctggtttttgtcatcgactcgggcctggcaaaggaaatgctttggaatccgcgt
gtacgcatgaatcaacttctgcgtgtgcctatctcccgcttttctgctgatcagcgcaag
ggtagggcaggtcgtatctctgacggagtatgtatccgcttgtacacgcagagtgcattt
cagacagagttccggcagtctaccatgcccgcgatacgaagctctagaatggagtctgag
gtattggctctgctttgcgccggccatcgaaacctgcttggtctggactttttagattct
ccggaccctgaaaatattgccagcgccatccgagagctgctagacttgcgcctcattacc
ggcagtgatcaggtcaatgagaccggtcaagtcatgctcccacgcctttcgcccacggta
gatgggcggctcgccgtgcaatttcctattgcaccagtgatgttcagagttttggagtca
gccgcaaggcttgagtgtctggaagagatgtgcgcaatagtcgctgcatctagccaacag
aaccccatttgggtgcgccctacggagttcgccgatgccgctgacctgcacggccctgcc
ctgttcgctcatccattgtcggaccacatcacgagcctcaacgctgtgcaggcgtatgcc
aaggcattcatggaaaagaaggtggacctcaacgaatggtgccttgagaacttcctttcg
cgagccgccctcgacagtgtttgcacgcttcgcaaccggctcatcaaacttgccgagaag
agatggcctggctgcatcccgacagtcgcagacgacattagtgctgatgagtaccatgtt
cgcatcaggaaggccttggccattggtctctgtacacaatcggccgtgaaaaagatcaaa
acagatctgcacatgacggtcaactacaacaagggcggcatcatatctgcagagagcagc
gtcctttaccatggatacgacttgtccagcatgccaatcaacagggcaagcaatggtttt
ccggcctaccaatggattgtctacgacgaattcgtcagtgtggccggaaagccgacgttt
agtaacgtgacggttattgaacctgagtgggtctgtaatgaagagttcatgtctcgggac
cgcgctaccaagaagtataatggtcaactcaagcagcccaagatccaagccaatcttgca
gcggctcgacagtcaatggccgacacagcagcagccacagcatcaatgacgcaagtcacg
atatag
DBGET
integrated database retrieval system
