Pestalotiopsis fici: PFICI_12231
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Entry
PFICI_12231 CDS
T04924
Name
(RefSeq) DNA mismatch repair protein msh-2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PFICI_12231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfy03400
]
PFICI_12231
DNA repair and recombination proteins [BR:
pfy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
PFICI_12231
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
MutS_IV
AAA_22
Motif
Other DBs
NCBI-GeneID:
19277244
NCBI-ProteinID:
XP_007839003
UniProt:
W3WQ79
LinkDB
All DBs
Position
Unknown
AA seq
923 aa
AA seq
DB search
MSSRPELKVEDETGFIRYFKSLPTVTDETVRIFDRGDWYTAHGEDANFIARTVYKTTSVV
RQLGRNDASGLPSVTMTITVFRQFLREALFKLGKRVQIYASSGGRMNWKIVKQASPGNLQ
DVEDELGQHFESAPMILAVKISAKQTEARSVGVCFADASVRELGVSEFLDNDLYSNFEAL
LIQLGVKECLLQFDKSEKEKDPELSKLKQIIDNCGVAISERPAGDFGIKDIEQDLARLLK
DERSASLLPQTDLKLAMGSAAALIKYLSVMQDPSNFGQYQLYQHDLAQFMKLDAAALKAL
NLMPGARDGVKSMSLYGLLNHCKTPVGSRLLSQWLKQPLMNRDEIEKRLELVEAFANDTE
LRQTIQEEHLKSIPDLYRLANRFQRNKANLEDVVRAYQVVIRLPGFLGTFEAVMDEQYKD
PLDQAYTIKLRELSDSLGKLAEMVETTVDLDALDNHEFIIKPEFDDQLRVIRKRLDKLRS
DMDREFRDAADDLGQEENKKIFMENHKVHGWCMRLTRTEAGCIRNKSKYQECSTQKNGVY
FTTKTLQALRREFDQLSQNYNRTQSSLVNEVVTVAASYCPVIERLAGVLAHLDVIVSFAH
CSVHAPTSYVRPQIHPRGEGQTVLKEARHPCLEMQDDIQFITNDVELVRDSSSFLIITGP
NMGGKSTYIRQIGVIALMAQIGCFVPCTEAELTIFDSILARVGASDSQLKGVSTFMAEML
ETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCSAMFATHFHELTAL
ADTYSQVRNLHVTAHISGTDSTADKREVTLLYKVEPGICDQSFGIHVAELVRFPDKVVRM
AKRKADELEDFTGKHEQNGLGVGYSKEDVEEGSALLKEVLVKWKDQVQGGSMSKEEMVAK
MRDLVKNDQRLLANPFFKAVEAL
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcccggcccgagctcaaggtcgaggacgagactgggttcattcgttacttcaag
tccctacccaccgtcacagatgaaaccgtcaggatattcgacagaggcgattggtatacg
gcccatggcgaagatgcaaatttcattgcgagaacagtgtacaagacaacgtcggtagtc
cgacaactcggccgaaacgatgcgagcggtttaccgtcggtcaccatgaccatcacagta
tttagacaattccttcgagaagcgctcttcaagctcggcaagagggtacagatatatgcc
agcagcggcggacgcatgaattggaagattgtgaaacaggcgtcccctggtaatctccaa
gatgtcgaggacgaattgggccaacactttgagtcggcacccatgattctggctgtcaag
atatcggccaaacagaccgaggcgaggagcgtcggagtttgctttgcagatgccagtgta
cgggagttgggtgtgagcgagttcctcgacaacgacctctactccaactttgaggctttg
ctcattcaactgggcgtcaaggaatgtctgctgcaattcgacaagtctgaaaaggaaaag
gaccctgaactctccaagcttaagcagatcattgacaattgcggagtcgccatatccgaa
agacccgccggcgactttggcatcaaagatattgagcaggacctggcaagattgctaaag
gatgagcggtctgccagcttgctgcctcaaactgacctgaagctcgccatgggctcggcc
gcagctctgatcaagtatctcagtgtgatgcaggacccttccaactttggccaatatcag
ctctaccagcacgacttggcgcagtttatgaaactggacgctgccgcgctgaaggccctg
aacctcatgcccggggcgcgtgatggtgtcaagagtatgagcttgtacggtctgctcaac
cactgcaaaacacccgttgggagtcgcttgctgtcccagtggctcaaacagcccctgatg
aacagggacgagattgaaaagcgtctcgaattggtcgaggcgtttgcaaatgacacagaa
ctacgacagactatccaagaggagcatctgaagtctatccctgatctgtaccgtctggca
aaccgcttccagagaaacaaggccaatcttgaggatgttgtgagagcctaccaagtcgtt
attcggttaccagggttcctcggcacgttcgaagcagtcatggatgagcaatacaaagat
cctctagaccaagcatataccatcaagctgcgggaactatccgatagtctcggaaagctt
gctgagatggtggagacaaccgtggatctcgatgctctggacaaccatgaattcatcatc
aagcccgagtttgatgaccagttgcgggtcattcgcaagcgattggacaagttgcgatct
gacatggaccgggagtttcgggatgccgcagacgacctcggccaagaagagaacaagaag
atattcatggagaatcataaagtgcacggctggtgtatgcgcctgacgcgaaccgaggcc
ggatgcatacgcaacaagtccaagtaccaggaatgttcgacccagaagaacggtgtatac
ttcaccacgaaaacgctacaggctcttcggcgcgagtttgaccaactgtctcaaaactac
aacagaacccagagcagtctggtcaatgaagttgtgaccgtggccgcatcgtactgtcct
gttattgagcggttggcaggcgtacttgctcatctcgatgttatcgtctcgttcgctcac
tgctctgtccacgcccctacatcctatgtacgcccccaaattcatcctcgtggcgaaggc
cagactgtgctcaaggaagcgcgtcatccttgcttggagatgcaggacgacattcagttc
atcaccaacgatgtggagctagtccgggactcgtcgtctttcctcatcatcaccggtccc
aatatgggtggtaaatctacgtacattcgccagattggtgtcattgctctgatggcacaa
atcggctgttttgtaccttgcaccgaggccgagctcaccattttcgattcaattctggcc
cgtgtcggtgccagtgactctcagctgaagggcgtgtcgacattcatggccgaaatgctc
gagactgcaaacattctcaaatccgcgacggccgaatcgctgattattattgatgagttg
ggtcgtggtacttccacgtacgatggctttggtctcgcctgggctatttcagagcatatt
gtcaaggagattgggtgttctgctatgttcgcaacacactttcacgagttgactgcactt
gccgacacctactcccaagttcgtaatctgcacgttacggcgcacatttctggcaccgac
tctactgccgataagcgcgaggtcacgctcctgtacaaggtcgagccaggcatttgcgac
cagagtttcggcattcatgtcgcagaacttgtccgtttccccgataaggtcgttcgcatg
gccaagcgcaaggccgacgagctcgaggactttactggcaagcatgaacaaaacgggttg
ggcgtaggttatagtaaggaggatgttgaggaaggtagtgctttgctcaaagaagttctc
gtcaaatggaaagatcaggtccagggaggcagtatgagcaaggaggagatggtcgccaag
atgagagacctcgtgaagaatgaccagcgcttgctcgcgaacccattcttcaaagctgtt
gaagcattgtag
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