Pestalotiopsis fici: PFICI_13427
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Entry
PFICI_13427 CDS
T04924
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PFICI_13427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfy03019
]
PFICI_13427
Enzymes [BR:
pfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFICI_13427
Messenger RNA biogenesis [BR:
pfy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
PFICI_13427
mRNA degradation factors
3'-5' decay
Ski complex
PFICI_13427
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4-like_stalk
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
Ski2_beta-barrel
Motif
Other DBs
NCBI-GeneID:
19278440
NCBI-ProteinID:
XP_007840199
UniProt:
W3WM44
LinkDB
All DBs
Position
Unknown
AA seq
1281 aa
AA seq
DB search
MGPPDLAQSLANLQITAAADNVNIDDILFQQGPRKRQKQDPAALKAQLENDYLNPSNKFS
NEWLNRLQQRWDCPTDLTELFRIAPTQTRTVTRFTRQGLEGKVTGYKNVTVPANSATAKN
STSFSRKPASRADFVRGAAGFFPFAPGGLEGVDSIAASEDQMLRPGAAAPNGTGNKLERV
IKLGAEGGLLEVAPGLERGIDFSKKKAKVDDSDAKAVEEVLDQEPEDAPNADGVDGIPAP
QPTEEELDGEDGEDIDALLPVEFPALEPHSALAASSARKAGKEWAHMVDINRGIPNFREL
VPDMAREWPFELDNFQKEAIYHLENGDSVFVAAHTSAGKTVVAEYAIALAARHMTKAIYT
SPIKALSNQKFRDFRETFDEVGILTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEF
VIFDEVHYVNDFERGVVWEEVIIMLPEHVSLILLSATVPNTKEFAQWVGRTKQKDIYVIS
TPKRPVPLEHYLWAGKNIHKIVDADKKFNEKGWKEADLALKGKDKALPAPAPAARGGANQ
RGNQRGGPQRGGPQGRGGRGGNSQGRGRGGPPRASHAPGHMGRAGRPGGFTSLNQDKNLW
VHMVQYLKKSTLLPACIFVFSKKRCEENADALSNQDFCTAHEKSHIHMIVEKSVARLRPE
DRALPQIIRIRELLSRGIAVHHGGLLPIVKELVELLFAQTLVKVLFATETFAMGLNLPTR
TVVFSGYRKHDGHTFRNLLPGEYTQMAGRAGRRGLDTVGTVIIVPPGGGDEAPPVVDLQN
MITGQPNKLKSQFRLTYNMILNLLRVEALKIEEMIKRSFSEHATQQLLPEHEKGVKIAEA
DLAKIKREACEKCDATLDDCHDASMKYRELTQELHKGMLSIPIGRKMFSQGRLIVFSKDG
VRTPGILLSDGISTKTTGGQPSIHVFEIRSMRETRDSTDLLPFLPAFRSLFTQLPQSKRL
IYFKTQHIAVGDVEYLTKTVTKGILPDIFQGNESHAKAKDRIFQICKSWEADIWEEIDLS
KIKSMQLQELIGKRHQEARRAVDTAPIHCESFLKHFAMCHDQWLIKEHISTLLATMADQN
LQLLPDYEQRIQVLKDLSFIDNETRIQLKGKVACEIHSADELVLTELILDNVLADYEPAE
IAALLSAFVFQEKTDSVPNLPGKLEQGIKTIVEISEKVNNVQTLHQVIQSSEESNDFVVR
PRFGLVEVVYEWARGMSFRNITDLTDVLEGTIVRTITRLDETCREVKNAARIIGDPALYQ
KMQEAQEMIKRDITAVASLYM
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgggacctcccgacctcgcgcagtcgctcgcgaaccttcaaattactgcggcagcagac
aatgtcaacattgacgacatcctgttccagcaaggcccccgaaagcgccagaagcaagat
cccgccgcgctcaaggctcaactcgagaacgactacctcaatccatccaacaagttctcc
aacgaatggctgaaccgactgcaacagcgatgggactgcccgaccgacttgaccgagctg
ttccgcattgcgccgacgcagacaagaaccgtcacacgcttcaccagacaaggccttgaa
ggcaaggtcactggctacaaaaatgtcaccgtgccggcaaacagcgcaactgcaaagaac
tcaacaagcttctcgcgaaagcccgctagtcgcgcggatttcgtcagaggtgcagctgga
tttttcccctttgcgcctggtggtctcgagggtgtcgactccattgctgctagcgaggac
caaatgcttagacctggtgctgcagctccaaatggaactggcaacaagctcgaacgggtc
attaagctcggtgccgaaggtggcttgctcgaagttgcgcctggacttgagcgaggtatc
gatttcagcaagaagaaggccaaggttgacgattcagatgccaaggctgtcgaagaggtg
ctcgaccaggagccagaggatgctccgaatgctgacggtgttgacggcatcccagcacca
caacccacggaagaagaactggacggagaagacggtgaggatattgacgctctactgccc
gtcgaatttcctgctctagaaccacacagtgctcttgctgcgtcgagtgctagaaaggct
ggcaaagaatgggcgcacatggtcgacatcaaccgaggtatcccgaacttcagagaattg
gttccggacatggcaagagaatggccttttgaactcgacaactttcagaaagaggctatt
taccatcttgaaaatggcgattccgtcttcgtcgctgcccacacttcggcaggaaagact
gtggttgccgagtacgctattgctctagcagcaagacacatgaccaaggccatctatact
tcccccatcaaggctctcagtaatcaaaagttccgagatttcagagaaactttcgatgaa
gtgggtatcttgaccggcgatgtccagatcaaccccgaagccagctgtctcatcatgacc
actgagattcttcgcagcatgctgtacagaggagctgatctgattagagatgtggaattt
gtcatctttgatgaggtgcattacgtcaatgactttgagcgaggtgtcgtgtgggaagag
gtcatcatcatgcttcccgagcacgtgtcgcttattttgctatcagcaacggttcccaac
accaaagagtttgctcaatgggtaggacgaacaaagcagaaggatatttacgtcatctcg
actcccaaacgtcccgtgccgcttgagcattatctatgggccggcaagaacattcacaag
attgttgacgctgataagaaattcaacgagaagggctggaaggaagctgatctggcttta
aagggcaaagacaaggctcttccagccccggcgccagcagcccgagggggtgccaatcag
cgaggcaaccaacggggtggcccccagcgaggtggcccccagggacgcggaggaagaggc
ggcaacagtcaaggacgtggccgcggtggtcctcctcgagcaagtcatgcccctgggcat
atgggcagagccggtcgcccgggagggttcacttcgttgaaccaagacaagaacttgtgg
gtacatatggtgcagtacttgaaaaagtccaccttgcttcccgcttgtatttttgtgttc
tcaaagaaacgttgcgaagagaacgcagatgccctcagcaaccaagacttttgcacggct
cacgagaagagtcacatccacatgattgttgaaaagtcggtagcacgactcagacctgaa
gaccgagcactaccacagattattcgcattcgggaactgctctccagaggaatagccgtc
catcacggtggacttctgcccatcgtgaaggaattggttgagctcctgtttgcgcaaaca
ttggtcaaggtgcttttcgctactgagacatttgcaatgggcctgaacctgcccactcgt
accgtcgtattctctggttaccgcaagcatgacgggcatacattccgaaatctcctgcca
ggagaatacacccagatggctggtcgagctggtcgtcgtggtcttgatactgttggcacg
gttatcattgtgccacctggtggtggtgacgaggcgcctcccgttgtcgatttgcagaac
atgattactgggcagcctaacaagctgaagtcacagttccgactcacgtacaacatgatc
ttgaatctactgcgtgtggaagctctcaagatcgaggaaatgattaagcgcagtttctcc
gaacatgcgacacagcagcttttaccagagcacgaaaagggagtcaagattgccgaagcc
gacttggcaaagattaagcgtgaagcttgtgaaaagtgcgatgcgacactggatgactgc
catgacgcctcgatgaagtaccgggagttgacccaagaacttcacaagggaatgctctcc
atacccattggccgcaagatgttttcccaagggcggcttattgtgttcagtaaggacggt
gtgcgcacccctggtattctgctatccgatggcatcagcacgaagactaccggtggacag
cctagcattcacgtctttgagattcggtccatgagagagacacgagattcaaccgacctc
ctaccattcctacctgctttccggtccttgttcacgcaactaccgcaatccaagagactc
atttacttcaagacccagcacattgcagtgggcgatgtagaatacctcaccaagactgtc
accaaaggcatcctgccagatatctttcaaggaaacgagagtcatgccaaggccaaggat
cgcattttccaaatttgcaagagttgggaagcagacatttgggaggagattgatctcagc
aagatcaagagcatgcaactgcaggaactgattggcaagcgacaccaggaagccagaaga
gcagtggatacagcgccaatccactgcgagagcttcttgaaacattttgccatgtgccac
gaccaatggctcatcaaggagcatatctcgacgctgctggctaccatggccgaccagaac
ttacaactgcttcccgattatgagcaacgtatccaagtccttaaggatctctcatttatt
gataatgaaacgcgaattcagctcaagggcaaagtggcatgcgagatccacagtgcagat
gaacttgtccttactgaacttatccttgacaacgttctggccgactacgagcctgctgaa
attgctgcgctgctatctgcctttgtcttccaagaaaagactgatagtgtgcccaatctg
cccggcaagctggagcaaggaatcaagactattgtcgagatttcggaaaaggtcaacaac
gtgcaaaccttgcaccaggtcatccagtcttcagaggagagcaatgactttgttgttcga
ccaagattcggacttgtcgaggtcgtctacgaatgggcgagaggcatgagtttccgaaat
attacagacttgaccgacgttttggagggaaccattgttcgaaccattacgcgacttgat
gagacatgccgtgaagtcaagaacgcagcaagaatcattggcgaccctgctttgtatcag
aaaatgcaggaagcgcaggaaatgattaagcgagatattactgctgttgcaagtttgtac
atgtaa
DBGET
integrated database retrieval system
