Pestalotiopsis fici: PFICI_13737
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Entry
PFICI_13737 CDS
T04924
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pfy
Pestalotiopsis fici
Pathway
pfy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pfy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PFICI_13737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pfy03041
]
PFICI_13737
03009 Ribosome biogenesis [BR:
pfy03009
]
PFICI_13737
Enzymes [BR:
pfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PFICI_13737
Spliceosome [BR:
pfy03041
]
Complex A
U2 snRNP components
U2 related factors
PFICI_13737
Complex B
PFICI_13737
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
PFICI_13737
Ribosome biogenesis [BR:
pfy03009
]
Eukaryotic type
90S particles
Helicases
PFICI_13737
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
HA2_C
HA2_N
ResIII
Motif
Other DBs
NCBI-GeneID:
19278750
NCBI-ProteinID:
XP_007840509
UniProt:
W3WN35
LinkDB
All DBs
Position
Unknown
AA seq
585 aa
AA seq
DB search
MDVSIGQEVGYAVKNDKKTSDNTRLIYTTDGYLLQAAKNDPTLSEFSCIIIDEAHERTVD
TDVLLGLLAKRRDDLKVVIMSATMDAAKFATYFGNAPTLHIPGQPHTLDILYLEEASPDY
HVDTVRTVKIIHDEYPRGDILVFMMSSNEIERVCTILRRNCQDLDVMPLYGALTKSEQQR
ALVQTERRKCIIATNIAETSLTIENVSYVVDCGYCIQSVYNPRTRTRVLQTGIISKAAAG
QRAGRAGRTSAGTCFRVYTEEFHDEVMLNTTRPQIFTTEGKAVVLAIKSLGHNDVFAFNW
LDAPQPETMLRALGDLRDLGFLDGTMKITDRGRSASRLPIDAMWLYAIMEGHDNWSCGAE
MCAIAAICSTQRPVFLRPSAHRYASDELRRQWVHPLSDHITLLNVLHAYVDVRTKAETVS
DRQTWCFANFLSYEALEEAFETRDQICTMIQRDVVRGWISKIPFRHPNDYDNIRRCLARG
LFLQSAFRHEEDVYRTFHDNQDALLHYHSALMVMAYGIDGQIVVFSSQTLTLVVCGATLT
QSESSHITKTTWVEIALLENPRIRVVIHDHASVVVGTGLKGKLCC
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggatgtctcaattggacaagaggtcggatacgctgtcaaaaatgacaaaaagaccagc
gacaacacgcgactcatctacacaactgatggatacctgttgcaagcagcaaagaacgat
ccgacactctcggaattcagctgcatcatcattgatgaggctcatgagagaaccgtcgat
acggatgttcttctcggacttttggccaagaggcgagatgatctgaaggtagtcatcatg
tctgccaccatggacgctgccaaattcgccacctattttggcaacgcacccacactccat
atccccggccaaccccatacgcttgatatcctatatctcgaagaggcctccccagactat
cacgtggacacagttcgaacggtgaaaatcattcatgatgagtacccccgaggagacatc
ctcgtcttcatgatgagctcgaatgagatagaacgcgtgtgtacaatcctgcgccgcaac
tgccaagacctcgatgtcatgccgctgtatggtgcgctcacgaaaagtgagcaacaacgg
gctcttgtgcagaccgagcgcaggaaatgcataatcgcaacaaacattgcggagaccagt
ctgacaattgagaatgtcagctacgttgttgattgcggctactgcattcagagcgtatac
aatccgcgtacccggactcgcgtgttgcagactggcataatctcaaaggccgctgctgga
cagcgtgcgggtcgagcaggtcggaccagcgcaggcacctgcttccgggtgtatacggag
gagttccacgacgaggtcatgttgaacacaacacgaccccagatcttcacaaccgaaggc
aaggccgttgttcttgcaatcaagtcgttgggacacaacgacgtatttgccttcaactgg
ctggacgcccctcagccagagaccatgcttcgtgctcttggggacctgagagacctaggt
tttctggatggcaccatgaaaatcacagatcgaggccgatccgcatcccgtctaccaatc
gatgccatgtggctttacgccattatggagggacatgacaactggtcatgtggagcagaa
atgtgtgccatcgctgcaatttgcagcacacagaggccggtattcctccgaccaagtgcc
catcggtatgcatcagacgagttgcgaagacaatgggtccatcctctgtccgaccacatc
acgcttctcaacgtgctccacgcatatgtggatgtcagaacgaaagcggagaccgtttca
gaccgacaaacttggtgctttgccaactttttgagttatgaagcactcgaagaggccttc
gagacccgcgatcagatttgcacgatgatccaacgagatgtagtgcgaggctggatcagc
aagatccctttccgtcatccgaacgactacgacaacatccgccgctgccttgcaagagga
ttgtttctgcagtctgcattccgacatgaagaggatgtatacagaaccttccatgataat
caagacgcacttcttcattaccacagtgccttgatggtcatggcttatggcattgatggc
cagattgtggttttctcgagccagacgctcactttggtcgtttgtggtgccacgctcacc
cagtccgagagcagtcatatcactaaaaccacttgggttgagatagcacttctcgagaac
ccgagaatcagggtcgtgattcatgatcatgcgagcgtcgtcgtcggcaccggtttgaag
ggtaagctctgttgctga
DBGET
integrated database retrieval system
