KEGG   Pseudomonas fragi: AV641_01955
Entry
AV641_01955       CDS       T04285                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pfz  Pseudomonas fragi
Pathway
pfz02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pfz00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AV641_01955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pfz03021]
    AV641_01955
Transcription machinery [BR:pfz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AV641_01955
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Sigma70_ECF Rv2175c_wHTH HTH_24 HTH_17 Sigma70_r3 HTH_31 BrxR_CTD EutK_C HTH_3 HTH_11 HTH_Crp_2 PCI TnsD MerR FaeA wHTH-PRTase_assc HetZ
Other DBs
NCBI-ProteinID: AMB81718
LinkDB
Position
complement(418516..419034)
AA seq 172 aa
MSSVQTPHSELVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGREDLKAPREP
RAFLAAIAKGLLFDHFRRAALEQAYLNELMLIPDAEQPSPEEQQLILEDLKAIDRLLAKL
SSKSRAAYLYSRIDGLTHAEIAQRLGVSVPRVRQYLAQGIRQCYIALYGEPA
NT seq 519 nt   +upstreamnt  +downstreamnt
ttgtcgtcagtccaaaccccccacagtgaactggttggagcgctttaccgcgaccatcgc
ggttggctgctggcgtggttgcgacgcaatgtggcctgcccgcaacgggcggaagacttg
agccaggacactttcgtgcgcctgctgggccgtgaagacctcaaggccccccgcgaaccc
cgggcttttctggcagccattgccaaaggcctgctgtttgaccattttcgccgcgctgcc
ctggaacaggcctacctcaacgagctgatgctgatccccgatgccgagcaaccctcgccc
gaagagcagcaactgatcctcgaagacctcaaagccatcgaccgcctgctggccaaactc
tcgagcaaatcccgggcggcctacctctatagccgtatcgacggcctgacccacgctgaa
attgcccaacgcctcggcgtatcggtgccccgcgtgcgccaatatctggcccagggcatc
cgccagtgctacatcgccctgtatggtgagccggcatga

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