Pseudomonas fragi: AV641_05315
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Entry
AV641_05315 CDS
T04285
Name
(GenBank) RNA polymerase-binding ATPase
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pfz
Pseudomonas fragi
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfz03021
]
AV641_05315
Transcription machinery [BR:
pfz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
AV641_05315
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMB78526
LinkDB
All DBs
Position
complement(1144437..1147283)
Genome browser
AA seq
948 aa
AA seq
DB search
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYSLRNAPLTRVRFSPG
DTIIHFEGWKMTVREVDDVDGLMVYHGLNEQNEPVTLPETQLSNFIQFRLASDRLFAGQI
DPLSWFSLRYHTLEHTSRQLQSPLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRASRVLIVVPENLQHQWLVEMRRRFNLEVALFDEERFIESDA
SNPFEDTQLALVALEWLVDDPKAQDALFAADWDLLVVDEAHHLVWHEDQVSPEYALIEQL
AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESENYRPVAQAVQELLDK
GRLSPEAHKTIHGFLGAEGDTLLAAVNDGDAEASARLVRELLDRHGTGRVLFRNTRAAIQ
GFPERKLHAYPLPCPDEYLELPLGEHAELYPEVSFQSQPDASEEERWWRFDPRVEWLTDT
LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFAHHLVLFDLPSHPDLLEQRIGRLDRIGQKHIIEVHVPYLETSP
QQRLFQWYHEALNAFLNTCPTGNALQHTFGPRLLPLLEAADDEEWQALIDEARAERERLE
QELHTGRDRLLELNSGGSGEGEALVEAILEQDDQFTLPIYMETLFNAFGIDSEDHSENAL
ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN
TAVALIKNKALKPGTVLLELIYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSSRVAF
ETLNEQLESVPRASANKFIQAQRDNLTPKINAGEAKIAPRHAERVAEAQRRLAADTEEEL
ARLTALQAVNPSVRDSELVALRKQREQSLAMLEKAALRLEAIRVLVAG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatcaaccggggcaacgctggattagtgacagcgaagcagagctaggt
ttaggcaccgttctggcacaggacggtcgcttgttgaccgtgctctatccggccactggc
gaaacccgccaatattcgctgcgcaacgcaccgctcacgcgcgtacggttctcgccgggt
gacaccatcatccacttcgaaggctggaagatgaccgtgcgcgaagtcgatgatgtcgac
gggctgatggtctatcacgggctcaacgagcaaaacgagcctgttaccctgccagaaacc
caactgtcgaacttcatccagttccgcctggccagcgaccgcttgttcgccggccagatc
gatccgctgtcctggttctccctgcgttaccacacccttgaacacaccagccgccagttg
cagtcgccactgtggggcctgggcggtgtgcgtgcacaacctattgcccaccagttgcac
atcgcccgcgaagttgccgaccggatagcaccaagggtcctgctggctgacgaagtaggc
ctgggtaaaaccatcgaagccggcctggtcatccaccgccagctgctcagtggccgcgcc
agccgcgtgctgatcgtggtgccggaaaacctgcagcatcaatggctggtggagatgcgc
cggcgcttcaaccttgaagtcgcgctgtttgacgaagagcgcttcatcgaaagcgatgcc
agcaacccgtttgaagatacccagctggcgctggttgcactggaatggctggtcgacgac
cccaaggctcaagacgctttgtttgcagcggactgggatttgctggtggttgacgaggcc
catcacctggtgtggcacgaagaccaggtcagcccggaatacgccttgattgaacaactg
gcagaagtgatcccgggcgtattgctgctgaccgctaccccggaacaactgggccaggac
agccacttcgcccgcttgcgcctgctcgaccccaaccgcttccacgatctggccgccttc
cgtgccgagagcgagaactatcgcccggtcgcccaggccgtgcaggagctgctggacaaa
ggccgcctgtcgcctgaagcccacaaaaccattcacggcttcctcggcgccgagggtgat
accttgctggctgccgttaacgatggcgatgccgaagccagcgcacgcctggtgcgcgaa
ctgctcgaccgtcacggcaccggccgcgtcctgttccgtaacacccgcgcagccattcag
ggcttcccggagcgcaagctgcatgcttatccgctgccatgcccggacgaatacctggaa
ctgccgctgggcgaacatgccgagctctaccccgaagtcagcttccagtcccagccggac
gccagtgaagaagaacgctggtggcgctttgaccctcgggtcgagtggctcaccgacacg
ctgaagatgctcaaacgcacaaaagtgctggtgatctgtgcccacgccgagaccgcaatg
gacctggaagacgccctgcgcgtgcgctccggcatccctgcaacggtcttccacgaaggc
atgaacattcttgagcgcgaccgcgcagcggcctacttcgcagacgaggagttcggcgcc
caggtactgatctgctcggaaatcggcagtgaaggtcgtaacttccagtttgctcatcat
ttggtgctgttcgatctgccgtcccacccggacctgctggaacaacgaattggtcgtctg
gaccggatcggccagaaacacattatcgaagtccacgtgccgtaccttgagaccagcccg
caacagcgcctgttccagtggtaccacgaagcgctgaacgccttcctcaatacctgccct
accggcaacgcactgcaacacacgtttggcccgcgcctgctgccgttgcttgaagctgct
gacgatgaagagtggcaggcattgatcgacgaagcccgcgccgaacgcgagcgtctggag
caagaactgcacaccggtcgcgaccgcctgctggagttgaactccggcggctcgggcgaa
ggcgaagcgctggttgaagcgatccttgaacaagacgatcaattcaccctgccgatctac
atggaaaccctgttcaacgcctttggcatcgacagtgaagaccactcggaaaacgccctg
atcctcaagccaagcgaaaaaatgctcgacgccagcttcccccttggcgacgacgaaggc
gtgaccatcacctacgaccgcaaccaggccctgtcgcgcgaagacatgcagttcatcacc
tgggaacacccgatggtgcagggcggcatggacctcgtattgtccggttcgatgggcaac
accgctgtcgcactgatcaaaaacaaggctctcaagcccggaaccgtactgcttgaactg
atttacgtcagcgaagtggttgccccgcgctcgctgcagctgggccgttacctgccacct
gccgctctgcgctgcctgctggacgccaacggcaatgacctgtcatcacgcgtggccttc
gaaaccttgaacgaacaactggaaagcgtgccccgtgccagcgccaacaagttcattcag
gcccagcgtgacaacctcacgccgaagatcaacgccggtgaagccaagatcgcgccacgc
cacgcagaacgtgttgccgaggcacagcgtcgcctggccgccgatactgaagaagagttg
gcacgcctgacagcattgcaagcggttaacccgagcgtgcgtgacagcgaactggttgcc
ttgcgcaagcaacgggaacaaagcctggccatgcttgagaaagccgccctgcgccttgaa
gccattcgcgtattggtcgcaggctga
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