Pseudomonas fragi: AV641_05855
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Entry
AV641_05855 CDS
T04285
Name
(GenBank) LysR family transcriptional regulator
KO
K05596
LysR family transcriptional regulator, chromosome initiation inhibitor
Organism
pfz
Pseudomonas fragi
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pfz03000
]
AV641_05855
03036 Chromosome and associated proteins [BR:
pfz03036
]
AV641_05855
Transcription factors [BR:
pfz03000
]
Prokaryotic type
Helix-turn-helix
LysR family
AV641_05855
Chromosome and associated proteins [BR:
pfz03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
AV641_05855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_1
LysR_substrate
HTH_AsnC-type
HTH_34
Cro
MarR_2
Sigma70_r4
HTH_24
HTH_50
Motif
Other DBs
NCBI-ProteinID:
AMB78630
LinkDB
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Position
1252146..1253039
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AA seq
297 aa
AA seq
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MFDYKLLSALAAVVEQAGFERAAQVLGLSQSAISQRIKLLEARIGQPVLIRATPPSPTEI
GRRLLNHVQQVRLLERDLQSAVPALDDEGLPERLRIALNADSLATWWAVAVGDFCAEQHL
LLDLVVEDQTVGLKRMRAGEVAACLCASERPVAGARSVLLGAMRYRALASPAFIARHFPE
GVSAGLLPKTPALVFGPDDFLQHRYLASLGVDGGFEHHLCPSSEGFIRLTEAGLGWGLVP
ELQVREQLASGALVELLADKPIDVPLYWHHWRNGGQLLGQLTEHLTRSAPRWLVPLA
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgttcgactataaattactctctgcccttgccgcagtcgtagagcaggccggttttgaa
cgggcggcccaggtcctgggcctttcgcaatcggccatctcccagcggatcaagctgctg
gaggcacgcatcggccagccggtgctgattcgcgccacaccgccgagcccgaccgagatt
ggtcggcgtttgctcaaccacgtccagcaagtgcgtctgcttgagcgtgacttgcagagt
gcggtcccggctctggacgatgaaggtctgcccgaacggctgcgcattgccttgaacgcc
gacagtctggccacctggtgggccgtggcggtgggggacttttgtgccgagcagcacctg
ttgctggacctggtggttgaagatcaaaccgtgggcctcaaacggatgcgggcgggtgaa
gtggccgcctgcctgtgcgccagtgagcgtccggtggccggggcccgtagcgtattgctg
ggcgccatgcgctaccgcgcactggccagcccggcgttcattgcccggcattttcccgag
ggggtgagtgccgggttgttgccaaaaacccccgcgctggtattcggcccggatgacttt
ttgcaacatcgctacctggcatcccttggggtcgacggcggcttcgagcaccatttgtgt
ccgtcctccgaaggttttattcgcctcaccgaagccggcctgggctgggggctggtacct
gaattgcaggtgcgcgagcagcttgcaagcggggctttggtggagcttttggcagataaa
ccgatcgacgtgccactgtactggcatcattggcgcaacggtgggcaactgctggggcaa
ctgaccgagcatttaacgcgctcggcaccccgctggttagtgcctttggcctga
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