Pseudomonas fragi: AV641_10235
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Entry
AV641_10235 CDS
T04285
Name
(GenBank) exonuclease sbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pfz
Pseudomonas fragi
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfz03400
]
AV641_10235
DNA repair and recombination proteins [BR:
pfz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AV641_10235
Archaeal homologous recombinant proteins
AV641_10235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Flavi_M
Motif
Other DBs
NCBI-ProteinID:
AMB79413
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All DBs
Position
complement(2248412..2249656)
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AA seq
414 aa
AA seq
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MRLFHTSDWHLGQNLHGQERDFEHACFLSWLLSQLADQQPDVLLIAGDIFDTVNPPVKAQ
ERLYDFIVSAHEQQPGLTIVMIAGNHDSGSRIELPAPLMRRLRAHALGRVLWLDDGRLDA
ERLLIPLPDASGEIAGWCLALPFLRPAEVTGAHLGDDYLRGIGQVHEWLIAAANARRKPG
QALIAISHAHMAGGSVSQDSERSLIIGNAEALPASLFGPSISYVALGHLHKPQRVNGEER
IRYCGSPIPLSFSEIGYQHQILDVQLDGETLVSVEPRLIPRAVNLQRIGPAPLAQVLEQL
AELPDIDLLADPQRQPWLEVRVKLDEPQPDLRQQIETALQGKSVRLVRIAAEYAGSGRRA
DEDDANGLIELDQLTPRELFSRAWQENYGSEADVQTLNDFALLLQEVQLEGEQP
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgtttcacacttccgactggcacctggggcaaaacctccatggccaggaacgc
gacttcgaacacgcttgctttctgagctggctattgagccaactggccgaccagcaaccg
gacgtgctgctgattgccggtgacatcttcgacaccgtcaacccgccggtcaaagcccag
gaacggctctacgactttatcgtcagcgcccatgagcaacagcccggcctgaccatcgtg
atgattgccggcaaccacgactccggatcccggattgagctgccggcgcccttgatgcgc
cgcctgcgggcccatgccctgggccgggtgctgtggctcgacgacgggcggctggacgca
gaacgcctgctgatcccgctccccgatgcctctggcgaaattgccggctggtgcctggcg
ctgccgtttctgcggcccgccgaagtcaccggcgcccatctgggggatgactacctgcgc
ggcatcggccaggtccatgaatggctgatcgccgccgccaacgcccggcgcaagccaggc
caggccctgatcgccatcagccatgcgcacatggccggcggttcggtctcgcaagactcc
gagcgcagcctgatcatcggcaacgccgaagccctgcccgccagcctgttcggccccagc
atcagctatgtcgccctggggcatttgcataaaccccagcgagtgaatggtgaagaacgc
attcgctactgcggatctccaattccgttgtcattctcggaaatcggctaccaacatcaa
atcctcgatgtgcaactggatggcgaaaccctggtcagtgtcgaaccgcgcctgatcccg
cgggccgtcaacctgcagcgcattggcccggcccccttggcgcaagtccttgagcaactg
gccgaactgccggacatcgacttgctggccgatccccagcgtcagccctggctcgaagta
cgggtcaaacttgacgagccgcaacccgatctgcgccagcaaattgaaaccgcgctgcag
ggaaaatcggttcgcctggtgcgcatcgctgccgagtacgccggcagtggtcggcgcgcc
gacgaggatgacgccaatggcctgatcgaactcgatcaactgactccccgggaactgttc
agccgcgcctggcaggaaaattacggcagtgaagccgacgtgcaaaccctcaacgacttc
gcgctgttgctgcaagaagtacagctggaaggtgaacaaccatga
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