Pseudomonas fragi: AV641_14525
Help
Entry
AV641_14525 CDS
T04285
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pfz
Pseudomonas fragi
Pathway
pfz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AV641_14525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pfz03400
]
AV641_14525
Enzymes [BR:
pfz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AV641_14525
DNA repair and recombination proteins [BR:
pfz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AV641_14525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
Helicase_RecD
SH3_13
Viral_helicase1
AAA_22
UvrD-helicase
AAA_17
AAA_28
DEAD
SLFN-g3_helicase
Mg_chelatase
T2SSE
AAA_25
nSTAND3
AAA_16
NTPase_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
AMB80196
LinkDB
All DBs
Position
complement(3264287..3266404)
Genome browser
AA seq
705 aa
AA seq
DB search
MILTLKQLSDSQRSSDAPAIALSQASSQDLLQQLELWVTRGWLRALDRSMAAFVLEQDPQ
APPSVLLAIAMTSHQLGRGHSCLDLTATLSAPDFVLSLPPEGDEGGQLPSQWLHGLDAVT
WRQALAASDLVEDRDTPIRYSERPLVLAGQRLYLRRFWNYEQKIAKALSARLTQPPITPD
HLSKRLDELFPESAKDGGQRITDWQKLACALAARGHFSVITGGPGTGKTTSVVRLLGLLQ
TPAVEAGKPLRIRLAAPTGKAAARLSESIGKAVSELQVTDDVRRAIPTDVSTLHRLLGSR
PDSRNFIHHQDNLLALDVLVVDEASMIDLEMMACLLDALPLQARLIMLGDKDQLASVDAG
AVLGDLCRDAEAGRYSAATSAWLTEHTHEAVEATGLQLGEGLGDPLAQQTVMLRYSRRFD
ANRGIGRLAKLVNEKNAGEARQLLEHPPEQLFSLKLRGEQDSKLTRLIIDGHPEADGKPP
GYRYYLEQLQQLRPATGTVWNSDGWVQWASNVLKAFDEFRLLCALRRGPWGVEGLNLRVA
GELKHRKLIDTDHGWYEGRPVLVTRNDYSLGLMNGDIGIALYLPVPDDSQPGRMILRVAF
PRNDGTGDVRFVLPSRLVEVETVYAMTVHKSQGSEFNHTALLLPDALNPVLTKELLYTGI
TRAKNWFSLIEAGPGVFEGAVSRNVQRLSGLALQLKAELSKEAQR
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgacactcaaacaactcagtgacagccagcgcagcagcgacgcacctgcgatt
gccctgtctcaggcttctagccaggatttgctgcagcagttggagctttgggtgacccgc
ggttggctgcgcgccctggatcgttcaatggccgcgttcgtcctggagcaggacccccaa
gcgccgccaagtgtcctgttggcgattgcgatgaccagccatcaattgggccgagggcat
tcctgtctcgatctgacggcaaccctcagcgcgccggacttcgtcctttcgctgccgcct
gaaggcgatgaaggtggacagctaccatcgcagtggttgcacggtttggatgcggtcacc
tggcgccaggcgctggctgccagtgatctggtcgaagaccgcgacaccccaatacgttac
tcggagcgccccttggtgctcgccgggcaacgcttgtacctgcgacgcttttggaactac
gagcagaaaattgccaaagcgctcagcgctcgactgactcagccgccgatcacccccgat
catttgtccaaacggctcgatgaattgtttccagaatcggccaaggacggtggtcagcgg
atcaccgattggcaaaagctggcctgtgcgttggctgctcgtgggcatttcagcgtgatc
accggcgggcctggcaccggcaagaccacgtcggtggtgcgcctgctggggctgctgcag
accccggccgtcgaggctggcaaacccttgcgcattcgcttggccgcgccgactggcaaa
gcggctgcacgcttgtcggagtccatcggcaaggcggtcagcgaactgcaagtgacggac
gacgttcgccgggccatccccaccgatgtttcgacgctgcatcgcttgctgggcagtcgt
cccgactcgcgcaactttattcaccatcaggacaatcttctcgcgctggatgtgttggtg
gtcgatgaagcatcgatgattgatctggaaatgatggcctgcctgctcgatgccttgccg
ctgcaggcacgcttgatcatgctcggcgacaaggaccagttggcctctgtcgatgctggc
gccgtgctgggtgacctgtgtcgcgacgccgaggctgggcgttactctgcggcgaccagc
gcctggctcactgaacacacccacgaagcagttgaggcgacgggcctgcaacttggcgag
ggcctgggcgaccctttggcgcagcagacagtgatgctgcgttactcgcgacgtttcgat
gccaacagaggcataggacgcctggcaaagctggtcaacgaaaagaatgctggcgaggct
cgtcaactgctcgaacatccgccggaacaactgttcagcttgaaactgcgaggcgaacaa
gacagcaaacttacccgtctaattatcgatggtcatcccgaggctgacggcaagcccccg
ggctatcgctattacctggagcaattgcaacagctgcggccggcaactggcactgtctgg
aacagcgatggctgggtgcaatgggcgagcaatgttctcaaagccttcgatgagttccgg
ctgctttgcgccttgcgccgtggcccttggggcgtagaaggattgaatctgcgcgtggcc
ggcgagctgaaacatcgcaaactgatcgacaccgaccatggctggtacgaaggccgacca
gtgctggtcacccgtaatgactacagcctgggattgatgaatggcgacatcggcatagcg
ctctaccttcctgtgcccgatgacagtcaacccggacgcatgatcctgcgggtggcgttc
ccccgcaatgacggcactggcgatgtacgctttgtcttgcccagccggctggttgaagtc
gaaacggtctacgccatgaccgtgcataaatcccagggctcggaattcaaccacaccgcg
ttgctgctcccggatgcgctaaacccggtgctgaccaaggagctgctctacaccggcatt
acccgcgcgaaaaactggttcagcctgattgaggccggccctggggtgtttgagggcgcg
gtgagccgcaatgtacagcgtttgagtgggctggcattgcagttaaaggctgagttgtcc
aaagaggctcaacgatga
DBGET
integrated database retrieval system
