Pseudomonas fragi: AV641_15600
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Entry
AV641_15600 CDS
T04285
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pfz
Pseudomonas fragi
Pathway
pfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV641_15600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfz03019
]
AV641_15600
03400 DNA repair and recombination proteins [BR:
pfz03400
]
AV641_15600
Enzymes [BR:
pfz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AV641_15600
Messenger RNA biogenesis [BR:
pfz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AV641_15600
DNA repair and recombination proteins [BR:
pfz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AV641_15600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_40
PAX
Motif
Other DBs
NCBI-ProteinID:
AMB80392
LinkDB
All DBs
Position
complement(3486443..3488572)
Genome browser
AA seq
709 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGDIIERVASGGDALVLMPTGGGKSLCFQVPALLRDGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLNAEQQRDLANRIKRGEIKMLYLAPERLVQ
PRMMAFLQSLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEVFPNVPRIALTATADKRT
REEIVTRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VDEVAQFLCDQGFPALPYHAGLPSETRAANQKRFLNEEGLIMVATIAFGMGIDKSNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEHHK
LDAMLSLCEETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGTGHLIDVLLGRENEKIRSMGHQHLSVFGVGKARAEGEWRTLFRQLVARGLADIDIE
GYGGLRLSDSCRPLLRGEVTLELRRELKPQTTVKSSSASPASQLVRGEEREQWEALRALR
RKLAEEHGVPPYVIFPDSTLLEMLRSQPTSLSEMAAVSGVGARKLERYGEAFLEVLGGQA
ETPKVVADIRHELISLARAGMTPLQISGQLQCSEKNVYTMLAEAIGRQELSLEQALDLPE
ELMGEVQDAFLDGEGELPSVASIAEQFKGRVPEGVLYCVRAALQAEFEM
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtactcaaggacatcttcggctacgacagtttccgtggc
cgtcagggtgacattattgagcgcgtggccagtggtggcgacgctttggtgctgatgcct
accggcggcggcaaatccttgtgtttccaggttccggcgctcttgcgcgatggcctggcg
gtggtggtgtcgccattgatcgcattgatggacgatcaggtggcaacccttgaagagctc
ggggtggcggcagcggccttgaactcgacgctgaatgccgagcaacagcgcgacctggcg
aaccggatcaagcgcggtgaaataaaaatgctctacctggcacctgaacgcctggtacag
ccgcgcatgatggcgtttttgcagagcctggacatcgccctgtttgccatcgacgaagcg
cattgcgtgtcccagtggggccacgacttccgtcccgaatacctgcagctgggccaactg
gccgaagtgtttcccaatgtgccgcggattgccctgactgccacggcggacaagcgcacc
cgcgaagaaatcgttacccgtctgcatttgcagaacgccgagcggtttttgtcgagtttc
gaccgccccaacattttttaccgcatcgtgcctaaagagcagccgcgcaagcagttgctg
gccttcctttccgaacgccgcagcgatgcgggcatcgtctattgcctgtcgcgcaaaaaa
gtcgatgaagtggcgcagttcctgtgtgatcagggtttcccggcactgccgtatcacgcc
ggcctgcccagcgagacgcgtgcagccaaccagaagcgctttctcaatgaggaggggctg
atcatggtggcgaccattgcgttcggtatggggatcgacaaatccaacgtgcgctttgtc
gcgcatctggatttgcccaagtcccttgaggcgtattaccaggaaaccggccgggccggg
cgcgatggcttgcccgccgacgcctggatggcctacggcctgcaagacgtggtgatgctc
aagcaaatgctgcaaaactccgagggagatgagcggcacaagcgtctggaacatcacaag
ctcgatgccatgttgtctttgtgtgaagaaacccgctgccgccggcagaccttgctcgcc
tatttcgacgaagacatgccgcaaccctgtgggcactgcgacaactgtgtggatggcgtg
caaacctgggatgccaccgagcctgcgcgccaggcgctgtcggcgatttatcgcacgggt
cagcgctatggcacaggtcatttgatcgatgtgttgctgggccgcgaaaacgaaaaaatc
cgcagcatgggtcatcagcatttgtcggtattcggtgtcggcaaagcccgtgctgaaggc
gagtggcgcacactgttccggcaattggtggcccgtggtctggccgatattgatatcgaa
ggctacggcggtttgcgattaagcgacagctgccggccgttgttgcgcggcgaagtgact
ttggaactgcgccgcgagctcaagccgcaaaccacggtcaagagtagttccgccagcccg
gccagccaactggtgcgtggcgaagagcgcgagcagtgggaggccctgcgggccttgcgg
cgcaaactggccgaagagcacggggtgccgccttacgtcatcttccccgactcgaccctg
ctggaaatgttgcgcagccagcccacctcgttgtccgagatggcagcagtcagcggcgta
ggtgcacgcaagctggagcgctacggcgaggccttcctcgaggttctgggcgggcaggcc
gaaaccccgaaagtggtggccgacatccgtcacgagctgatcagcctggcccgcgccggc
atgacgccattgcagatttccgggcagctgcaatgttctgaaaagaacgtttatacgatg
ctggctgaagcaatcggccgtcaggaattgtcccttgagcaggctttggacttgcccgag
gagctgatgggcgaagtgcaggacgcgttcctggatggtgagggcgagctgccaagtgtg
gccagcattgccgagcagttcaaaggccgggtacctgaaggcgtgctgtattgcgtgcgt
gcggcactgcaggccgagttcgaaatgtag
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