Pseudomonas fragi: AV641_19915
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Entry
AV641_19915 CDS
T04285
Name
(GenBank) RpiR family transcriptional regulator
KO
K19337
RpiR family transcriptional regulator, carbohydrate utilization regulator
Organism
pfz
Pseudomonas fragi
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pfz03000
]
AV641_19915
Transcription factors [BR:
pfz03000
]
Prokaryotic type
Helix-turn-helix
Other families
AV641_19915
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_6
SIS
SIS_2
LacI
TrwC
Motif
Other DBs
NCBI-ProteinID:
AMB81179
LinkDB
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Position
complement(4423939..4424799)
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AA seq
286 aa
AA seq
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MDILYQIRVRQDTFSAAEARIARLILSDTGFAASASLDELALRAEVSSATLSRFARSVGC
RDLRDLRLQLAQASGVGSRFLDTGSMPEQSAFFRQIVSDIESTLHEHLAGFNGVHFADAV
KLLGEAKMIHAFGMGGCSSVYSDELQVRLVRLGYPVAACRDVVMMRVTAATLGPEHAVIV
CSLTGLTPELIEVVKLAHNYGAKVIAITRPATPLAQLADVVLALQGVETSFIYKPTAARY
GMLLAIDVLATELALSMPEANQERLRRIKLALDDYRGGDDCLPLGD
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggacatcctgtatcaaatccgggttcgccaggacaccttcagcgctgccgaggcccgc
attgcccggttgatactcagcgataccggttttgccgccagtgccagcctcgatgagctg
gcgctgcgggccgaggtcagcagcgccacgctgtcgcgctttgcgcgcagtgtcggctgc
cgtgatttgcgtgacttgcgcctgcaactggcccaggccagcggggtgggcagtcgtttt
ctcgataccggcagcatgcctgagcagtcggcttttttccgtcagattgtgagtgatatt
gaatcgacgctgcacgagcatctggccggcttcaatggcgtgcatttcgccgatgcggtc
aagctgctgggcgaagcgaagatgattcatgcgttcgggatgggcggctgttccagtgtc
tacagcgatgaattgcaggtgcgtctggtgcgcctggggtacccggtcgcggcctgtcgc
gacgtcgtgatgatgcgggtcacggcggcgaccctgggaccggagcatgccgttattgtg
tgctcgctgaccggcctgacccccgagctgatcgaggtggtaaagctggcgcataactat
ggcgccaaagtgattgccatcacccggcccgctacgccgctggcgcaactggccgatgtg
gtgctggcgctgcaaggggtggaaaccagctttatctacaaaccaacggcggcccgctac
gggatgctgctggccattgacgtgcttgccaccgagctggcgctgtcgatgcctgaagcc
aaccaggagcgcttgcgccggatcaaactggcactggatgactatcgcggcggtgatgat
tgcctgccattgggggattga
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