Pseudomonas fragi: AV641_20700
Help
Entry
AV641_20700 CDS
T04285
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pfz
Pseudomonas fragi
Pathway
pfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV641_20700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfz03019
]
AV641_20700
03016 Transfer RNA biogenesis [BR:
pfz03016
]
AV641_20700
Enzymes [BR:
pfz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AV641_20700
Messenger RNA biogenesis [BR:
pfz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AV641_20700
Transfer RNA biogenesis [BR:
pfz03016
]
Prokaryotic type
tRNA degradation factors
AV641_20700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TRAM_2
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AMB81322
LinkDB
All DBs
Position
complement(4602078..4604735)
Genome browser
AA seq
885 aa
AA seq
DB search
MADWQTLDPEAAREAEKYENPIPSRELILQHLAERGSPAAREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLIPDDGSDDLFMSPSQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHETIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNAGAKVGQFVEVKITHWPTPRFQPQGDVLEVVGNYMAPGMEIDIALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEARPGKLRLFS
GGWTLYVAIADVSSYVKIGSALDAESQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKSGEMTDYKFYEAVIHSQARLTYNKVSTILEQPKTSEAKQLRSEYADVVP
HLKQLYSLYKVLLAARHVRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKMDTPHVRRAGAMTIPKARIYPYDEAILEQLGEQCSMSERRADEATRDVTNWLKCE
FMKDRVGESFPGVVTAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTLSAPIGRKNRGTDAPAGKNAGKSGTKATE
KPVEPAPAARRSAPKTAKKSDETYRPGDAAAKNAELRKSRELKQALLADAKNGGRAAESG
KSGRGAPAKDAGKPSKPSKHRKGPPKSGTAPAAKSGGARKPKVKS
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagaccctcgatcccgaggccgcacgtgaagcggaaaaatacgaaaac
cctatccctagccgcgagctgatccttcagcatctggccgagcgtggttcgccggctgct
cgcgagcagttggtagaagagttcggtctgactacagaagaccaaatcgaggccttgcgt
cgtcgcctgcgtgcgatggagcgtgatgcccagctcatttatacccgccgtggcacttat
gcgccggtggacaagctcgacctgattctcggccgcatcagtggccatcgcgatggcttc
ggctttctgatccctgatgatggcagtgacgacctgttcatgagcccgtcgcaaatgcgc
ctggtgttcgatggcgaccgtgcgctggcccgtgtttcggggctggatcgccgtggtcgt
cgtgaaggcgtaatcgtcgaagtggtttcgcgtgctcacgaaaccatcgtgggtcgttac
ttcgaagaaggcggcattggctttgtagttgccgacaatccgaagatccagcaagaagtg
ctggttaccccgggtcgcaatgcaggcgccaaggtgggtcagtttgtcgaagtgaagatt
acccactggccgacgccgcgcttccagccgcaaggtgatgtgcttgaagtggtgggcaac
tacatggcgcccggcatggaaatcgacattgccctgcgcacctacgacattcctcacgtc
tggccggaagcggtgcttaaagaagccgccaagctcaagcctgaagtcgaagagaaagac
aaagagaagcgcatcgatctgcgccatctgccgttcgtcaccattgacggcgaagatgcc
cgtgacttcgatgacgctgtttactgcgaagccaggcctggcaagctgcgcctgttctcg
ggtggctggaccttgtacgtggccattgccgacgtatccagctacgtgaaaatcggttcg
gcactggatgccgagtctcaggttcgtggcaactcggtgtacttccctgagcgcgtgatt
ccgatgctgcctgagcagctgtccaacggtctgtgctccctgaacccgaaagttgaccgt
ttggcgatggtttgcgagatgaccatctccaaatccggcgaaatgaccgactacaagttc
tacgaggcggtgattcactcccaggcgcgcctgacctacaacaaggtcagcaccattctg
gaacagccgaaaaccagcgaagccaagcaactgcgcagcgaatacgctgatgtagtgccg
cacctcaagcagctttactcgctgtataaagtgctgctggccgctcgtcatgtgcgtggt
gcgattgattttgaaacccaggaaacccggattatcttcggctccgagcgcaaaattgcc
gagattcgcccgaccacccgtaatgacgcgcacaagctgatcgaagaatgcatgctggcg
gccaacgtggccaccgccgagttcctcaaaaagcacgaaattccagctctgtatcgcgtt
cacgatggtccgccacctgagcgtctggaaaaactccgtgcattcctcggtgagctgggt
ctgagcctgcacaaaggcaaggacggcccgtcgccgaaggattaccaggcgttgctggcc
agcatcaaggatcgtccggatttccacctgatccagaccgtgatgctgcgttcgttgagc
caggcggtgtacagcgctgataaccagggccacttcggcctgaattatgaagcctatacc
cacttcacttcgccgattcgtcgctacccggacttgctcacgcaccgggcgattcgcagc
gttatccattccaaaatggataccccgcacgttcgtcgtgccggcgcgatgacgattccg
aaagcgcgtatctatccgtacgacgaagcgatcctcgagcagctcggcgaacaatgttcg
atgagcgagcgccgtgccgacgaagccacgcgtgacgtgaccaactggctcaagtgcgag
ttcatgaaggatcgtgttggcgagtcgttcccgggtgtagtgacggcagtaacgggcttt
ggcctgtttgtcgaactgaccgacatttatgtagaaggtctggtccacgtgaccgccttg
ccgggtgactactaccacttcgatcctgtgcatcaccgcctggcgggcgagcgcaccggt
cgcagcttccgtctgggcgacaccgttgaagttcgagtaatgcgcgtcgatctcgacgaa
cgcaaaatcgacttcgaaatggctgagaaaaccctcagcgcgccgattggtcgtaaaaat
cgtggtactgacgcacctgctggcaaaaatgctgggaaatccggcaccaaagccacagag
aagcccgtcgaaccggctccggccgctcgtcgtagcgcgcccaaaactgccaagaaatcc
gacgagacctatcgtcctggcgatgctgcggccaaaaatgccgagctgcgcaaaagtcgt
gaattgaaacaggcgctgctggccgacgcgaaaaacggcggtcgtgcagctgagtcggga
aagtcgggtaggggggcacctgctaaagacgcaggcaagccttccaaaccgagcaaacat
cgtaaaggcccgccaaaatcgggcaccgctcctgccgccaaaagtggtggggcgcgtaaa
cctaaggtcaagtcatga
DBGET
integrated database retrieval system
