Pseudomonas fragi: AV641_20795
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Entry
AV641_20795 CDS
T04285
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pfz
Pseudomonas fragi
Pathway
pfz03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
AV641_20795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pfz03019
]
AV641_20795
03009 Ribosome biogenesis [BR:
pfz03009
]
AV641_20795
Messenger RNA biogenesis [BR:
pfz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AV641_20795
Ribosome biogenesis [BR:
pfz03009
]
Eukaryotic type
Pre-60S particles
RNases
AV641_20795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AMB81337
LinkDB
All DBs
Position
complement(4624377..4624919)
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AA seq
180 aa
AA seq
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MNNAQNLIWIDLEMTGLDPDNDVIIEMATIVTDSNLNTLAEGPVIAIHHSDAVLARMDEW
NTRTHGGSGLTQRVKDSTTTMAQAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYTHMK
TLESYFHYRNLDVSTLKELVARWAPEVRDSLVKKGTHLALDDIRESIAELQHYRKHFIKF
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacgcgcagaacctgatctggatcgacctggaaatgaccggtctggatcctgat
aacgacgtcattattgaaatggccaccattgttaccgacagcaatctcaacaccctggct
gaaggtccggtcatcgcgatccatcacagcgatgcagtgctggcgcgcatggacgaatgg
aacactcgcacccacggtggcagcggcctgacccagcgggtcaaggacagtaccaccacc
atggcccaggccgaagcgcagaccatcgcctttctggaacagtgggtgcctaaaggcaaa
tcaccgatctgtggcaacagcatctgtcaggaccggcgctttttgtacacccatatgaaa
accctcgaaagctacttccactaccgcaatctcgacgtctcgacccttaaagagctggtt
gcccgctgggctccggaagtgcgtgacagcctggtgaaaaaaggcacgcacctggcactg
gacgacattcgcgagtcgattgccgagctgcagcactaccgcaagcacttcatcaagttc
taa
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