Pseudomonas fragi: AV641_22105
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Entry
AV641_22105 CDS
T04285
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pfz
Pseudomonas fragi
Pathway
pfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV641_22105 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pfz03021
]
AV641_22105 (rho)
03019 Messenger RNA biogenesis [BR:
pfz03019
]
AV641_22105 (rho)
Transcription machinery [BR:
pfz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AV641_22105 (rho)
Messenger RNA biogenesis [BR:
pfz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AV641_22105 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
Spore_III_AA
NACHT
AAA
Motif
Other DBs
NCBI-ProteinID:
AMB81579
LinkDB
All DBs
Position
complement(4929562..4930821)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPTVRMKMEIGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNISRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRKIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaaa
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctccgttccgctgacgcttcttacctggccggcccagacgatatttat
gtctcgccaagccagattcgacgcttcaacttgcgcaccggcgacaccatcgtcggtaaa
atccgtccgccaaaagaaggcgagcggtacttcgccctgctgaaagtcgacacgatcaac
tacgatcgtccagagaacgcgaaaaacaagattctcttcgagaacttgaccccgctgttc
ccgaccgtacgcatgaagatggaaatcggtaacggttccaccgaagatctgaccggtcgt
gtgatcgacctgtgcgccccgatcggtaaaggtcagcgtggtctgatcgttgctccgcca
aaagcgggcaagaccatcatgctgcagaacatcgcgtccaacatctcgcgtaacaaccct
gaagtgcacttgatcgttctgttgatcgacgagcgtccggaagaagttaccgaaatgcag
cgtaccgttcgtggcgaagtggttgcttccacgttcgacgagccaccaacccgccacgtg
caggttgctgaaatggtgatcgagaaggccaagcgcctggtcgaacacaaaaaagacgtg
gtgatcctgctcgactccattacccgtctggctcgtgcctacaacaccgttatccctagc
tccggcaaggtactgaccggtggtgtcgatgctcacgcccttgagaagccaaagcgtttc
ttcggtgctgcgcgaaacatcgaagaaggcggctcgctgaccatcatcgctaccgcgctg
gttgaaaccggctcgaagatggatgaagtgatctacgaagagttcaaaggcaccggcaac
atggaactgcctctggaccgcaagatcgctgaaaagcgcgtcttcccggcgatcaacatc
aaccgttccggcactcgccgcgaagagttgctgactgccgatgacgagttgcaacgcatg
tggatcctgcgcaagctgttgcacccgatggacgaagttgcagccatcgagttcctgatc
gacaagttgaagcagaccaagaccaacgatgagttcttcttgtcgatgaagcgtaagtaa
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