Phaeobacter inhibens DSM 17395: PGA1_c01440
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Entry
PGA1_c01440 CDS
T02192
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pga
Phaeobacter inhibens DSM 17395
Pathway
pga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PGA1_c01440 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pga03021
]
PGA1_c01440 (rpoC)
03400 DNA repair and recombination proteins [BR:
pga03400
]
PGA1_c01440 (rpoC)
Enzymes [BR:
pga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PGA1_c01440 (rpoC)
Transcription machinery [BR:
pga03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PGA1_c01440 (rpoC)
DNA repair and recombination proteins [BR:
pga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PGA1_c01440 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AFO89888
LinkDB
All DBs
Position
137926..142167
Genome browser
AA seq
1413 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEYMDAQDQFGMDAFT
ANIGAEAIREMLAAIDLEAEAEHLRAELAEATGELKPKKIIKRLKVVESFLESGNRPEWM
VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLEREGMPGEGKIFGTIDEVQHAL
DAGEVHLHTKITARITQIDEEGNEVLKRFETTPGRVRLGALLPKNVKAPFELVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDTKWTLVDETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMGTISADKRNEAGAVMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRDRDCGTEAAITAEAAVNDGEVVASLGERILGRV
AAEDIKKPGTEEIIVAVGQLIDERMADAVEEAGVQSTRIRSPLTCEAEEGVCAQCYGRDL
ARGTQVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGKIVFEMPQ
TLENANGETLVVGRNMKLIIQDEHGEERASHKLGYGSKLFVKEGQSVARGDKLFEWDPYT
LPIIAEKPGTAKYVDLVSGIAVRDETDEATGMTQKIVIDWRAAPKGSDLKPEIILVDGDG
EPVRSDAGNPLTYPMSVDAILSVEEGQQIMAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGRDYKNKRRISIEPADESMEPVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ISDSGDTTLLKGEHVDKQEFDTANEKALSRGKRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQRVRNIAQGRDNVVLEARRE
EAEAAAALAAPSMDDVATEDNLDNLVETPESRD
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacgaataatccgttcaacccgctgacaccgccaaaggtctttgat
gagatcaaggtgtcgctggcatcgcccgagcggatcctgtcgtggtcctacggcgagatc
aaaaagccggaaaccatcaactaccggacgttcaaacccgaacgtgacggtctgttctgc
gcgcgtatttttggcccgatcaaagactacgaatgtctttgcggcaaatataagcgcatg
aaatatcgcggcgttgtctgcgagaaatgcggtgtggaagtcaccctgcaaaaggtccgc
cgcgagcgcatgggccacatcgaactggcgtcgccggttgcgcatatctggttcctcaag
tcgctgccgtcgcgcatcggcctgatgctggatatgaccctgcgcgatcttgagcgggtt
ctgtatttcgaaaactacgttgtcattgagccgggtctgactgacctcacttacggccag
atgatgaccgaagaagaatacatggacgcccaggaccagttcggtatggacgccttcacc
gccaacatcggcgctgaagcgatccgtgaaatgctggctgccatcgatctggaagccgaa
gccgagcatctgcgtgcagagctggccgaagccacaggcgagctgaagcccaagaagatc
atcaagcgcctgaaggtggttgagagcttcctggaatccggcaaccgcccggaatggatg
gtcatgaccgtcattcctgtgatcccgccggaactgcgcccgctggtgccgctggatggg
ggccgcttcgcgacctctgacctgaacgatctgtatcgtcgcgtcatcaaccggaacaac
cgtctgaagcgcctgattgagctgcgcgcgcctgacatcatcgtccgcaacgaaaagcgg
atgctgcaggaatccgtggatgctctgttcgacaacggtcgtcgtggccgcgtgatcacc
ggcgccaacaaacgtccgctgaaatcgctgtccgacatgctgaagggtaagcagggccgc
ttccgtcagaaccttttgggtaagcgggtcgacttctccggtcgttcggtcattgtgact
ggccccgagcttaagctgcaccagtgcggtctaccgaaaaagatggcgctcgaactgttc
aagcccttcatctattcgcgcctggaggccaaaggtctgtcctccaccgtgaagcaggcg
aagaagctggtcgaaaaagagcgtcccgaagtctgggatatcctcgacgaggttattcgc
gaacaccctgttatgctgaaccgtgcgccgacgctgcaccgtcttggcattcaggcgttt
gaacccacgctgatcgaaggtaaggccattcagctgcacccactggtctgctcggcgttc
aacgcggacttcgacggtgaccagatggctgtgcacgttccgctgagcctcgaggcccag
ctggaagcgcgcgtcctgatgatgtccacgaacaacgttctgtcgcctgccaacggcgcg
ccgatcatcgttccgtcgcaggatatgatcttgggtctctactatgtgaccttggaacgc
gaaggcatgcctggtgaaggcaaaatctttggtaccatcgacgaggttcagcacgcgctg
gacgccggcgaagtgcacctgcacaccaagatcacagcgcggatcactcagatcgacgaa
gaaggcaacgaggtcctcaagcgttttgagaccaccccgggtcgtgtccgtctgggcgcg
ctgctgccgaaaaacgtcaaagcaccgttcgagctggtcaaccgtcttctgcggaagaaa
gaggttcagcaggtcatcgacaccgtctaccgttactgcggtcagaaagagtccgtgatc
ttctgtgaccagatcatgaccatgggtttccgtgaagcgttcaaggcgggcatttcgttc
ggcaaggacgacatggtgatccccgacaccaaatggacgctggtcgatgagacccgtgat
caggtgaaggacttcgaacagcagtacatggacggcctgatcactcagggtgaaaagtac
aacaaagttgtcgatgcctggtcgaagtgtaacgacaaagtcactgacgcgatgatgggc
accatctccgcagacaagcgcaacgaggctggcgccgtgatggaaccgaactcggtttac
atgatggctcactccggtgcgcgtggctcggttactcagatgaaacagctgggcgggatg
cgtggcctgatggcgaagccgaatggcgacatcatcgagaccccgatcatctcgaacttt
aaagaaggcctgaccgttctcgagtacttcaactcgactcacggtgcccgtaagggtctg
tcggataccgcgcttaagacggcgaactcgggttacctgacccgtcgtctggtggacgtg
gcacaggattgcattgtgcgcgatcgtgactgtggcaccgaggccgcgatcactgcggaa
gcagcggtcaacgacggtgaggttgtggcctcgcttggtgaacgtattctgggtcgtgtt
gcggctgaggatatcaagaagcctggcaccgaggagatcatcgtcgccgtaggccagctg
atcgacgaacgcatggcagatgcagtggaagaggccggcgttcagtcgacccgtatccgc
tcgccgctgacctgtgaggccgaagaaggcgtctgcgcccagtgctatggccgtgacctg
gcccgtggtacgcaggtgaacaccggtgaagctgtcggcatcatcgccgcgcagtccatc
ggtgaacccggtacacagctgacgatgcggaccttccacatcggcggcgttgctcagggt
ggccagcagtccttcctcgaagcctcgcaagagggcaagatcgtcttcgagatgccgcag
accctggagaacgccaacggcgagaccctggttgttggtcggaacatgaagctgatcatt
caggacgagcacggtgaagagcgcgccagccacaagctgggttacggctccaaactgttc
gtcaaggaaggtcagtccgtggcccgtggcgacaagctgttcgaatgggatccctacacc
ctgccgatcatcgccgagaaacccggtaccgcgaaatatgtggacctggtctccggtatc
gccgtgcgggatgagaccgacgaagccaccggcatgacccagaagatcgtgatcgactgg
cgtgcggctccgaagggctccgatctcaagccggaaatcatcctggtggatggcgatggt
gagccggtgcgcagcgatgcgggcaacccgctgacctatccgatgtccgtggacgccatt
ctgtcggtcgaagaaggccagcaaatcatggcaggtgacgttgtcgcgcgtatcccgcgt
gaaggcgccaagaccaaggacatcaccggtggtctgccgcgcgttgcggaactgttcgaa
gctcgtcgccccaaggatcacgcgatcatcgccgaaatcgatggttatgtgcgctttggc
cgcgactacaagaacaagcgtcgcatctcgatcgagccggctgacgagtcgatggagccc
gtcgaatacatggtgcccaagggcaagcacattccggttcaggaaggtgacttcgtccag
aagggcgactacatcatggacggcaacccggcgccgcatgacatcctgtccatcatgggt
gtcgaggctctggccaactacatgatcgacgaggttcaggacgtctatcgcctgcagggt
gtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagtgggag
atctccgactccggtgacacaacgctgctgaaaggtgagcatgtggacaagcaggagttc
gacaccgccaacgaaaaggcactgtcacgcggcaagcgtccggcacagggcgagccgatc
cttctggggatcaccaaggcatcgctccagactcggtcgttcatctctgcggcgtccttc
caggaaaccacccgcgttctcaccgaggcttcggtgcagggcaaacgcgacaagctggtg
ggcctcaaagagaacgtcatcgttggccgcctgatcccggctggtaccggtggtgccact
cagcgggtacgcaacatcgctcagggacgtgacaatgtcgtccttgaggcacgccgcgag
gaggccgaagccgccgccgcactggctgccccgtcgatggatgatgttgccaccgaggat
aacctcgacaatctggtggaaaccccagagagccgcgattga
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integrated database retrieval system
