Phaeobacter inhibens DSM 17395: PGA1_c11390
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Entry
PGA1_c11390 CDS
T02192
Symbol
rhlE2
Name
(GenBank) putative ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pga
Phaeobacter inhibens DSM 17395
Pathway
pga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGA1_c11390 (rhlE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pga03019
]
PGA1_c11390 (rhlE2)
Enzymes [BR:
pga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PGA1_c11390 (rhlE2)
Messenger RNA biogenesis [BR:
pga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PGA1_c11390 (rhlE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
HEM4
NAT10_TcmA_helicase
SUa-2TM
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFO90858
LinkDB
All DBs
Position
complement(1179267..1180610)
Genome browser
AA seq
447 aa
AA seq
DB search
MKGRDVTEFSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAA
FGVPLIAQMMQYGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSI
NPQISRLSRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAA
LLPEQRQTMLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSL
LKELLGAHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGE
VKILVATDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMG
ELKAIQKTMNLNIPVASGRPWEVLPDAKAPAGRRGGGKPGGGGKPGGHRRRRSGGGGGGQ
GGARSGGQGAGQGGGQGKPGGQRRRAQ
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaggacgagacgtgacagaattttcaaccatggggctgcccgaaaagctcctgacc
cgcattgctgagctgggctacacagatcctaccccgattcaggcacgcgcaattccgcat
gcgctgaacggccaggacgtgctgggcctggcgcagaccggcaccggcaagaccgctgcc
ttcggcgtgcccctgattgcccagatgatgcaatatggccgcaagcctgccgccaaaacc
gtgcgcggtctggtgctggcgccgacccgcgaactggccaaccagatcgcggccaacctc
aaaggcctgaccgaaggcaccccgatcaaaaccgggctggttgtcggcggtgtgtcgatc
aacccacagatcagccgcctgtcgcgcggcaccgacatcctgatcgccacgccgggccgt
cttctggacatccttgatcgtggcgcactggaccttggctcctgcgacttcctcgtattg
gacgaggcggatcagatgctggacctcggcttcatccacgcgctgcgcaaaatcgcggcg
ctgctgcccgaacagcgccagaccatgctgttctcggccaccatgcccaagcagatgaac
gagatcgccaactcctacctgcaaagccccgtccggatcgaggtgaaccctcccggcaag
gccgcagacaagatcacccagtcggtgcacttcatcgccaaggctgaaaagctgtcgctc
ctgaaggagctgctgggcgcccacaaggatgagcgtacgctggtctttggtcgcaccaaa
cacggtatggaaaagctgatgaagacgctgtccgcagcagggttctcagcggcggcgatc
cacggcaacaaatcccagggccagcgcgaacgcgcgcttgcctcattcaaatcgggcgag
gtgaagatcctcgtggccaccgatgtggccgcccgcggtctggacattcccgacgtgaaa
tacgtctacaactacgagctgcccaacgtccccgacgcctatgtgcaccgcatcggccgg
accgcacgcgcgggcaaggatggtcaggccgtggccttctgcgcgcccgatgagatgggc
gaactgaaagccattcagaaaaccatgaacctcaatatcccggtggcgtccggccgtccg
tgggaggtgctgcccgatgcaaaggctccggccggacgtcgcggtggtggcaaacccggt
ggcggcggcaaacccggcggtcatcgtcggcggcgcagtggcggcggtggcggcggccag
ggcggcgcgcgcagcggtggtcagggtgcaggccaaggtggcggacagggcaaacccggc
ggccagcgccgccgcgcccaataa
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