Phaeobacter inhibens DSM 17395: PGA1_c14920
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Entry
PGA1_c14920 CDS
T02192
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pga
Phaeobacter inhibens DSM 17395
Pathway
pga03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PGA1_c14920 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pga03400
]
PGA1_c14920 (mfd)
Enzymes [BR:
pga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PGA1_c14920 (mfd)
DNA repair and recombination proteins [BR:
pga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PGA1_c14920 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
Cas3-like_C_2
AAA_30
SecA_DEAD
AAA_16
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFO91203
LinkDB
All DBs
Position
1548707..1552174
Genome browser
AA seq
1155 aa
AA seq
DB search
MAQRAITAGGAPEGFDARLILKEAASSDAPVVHVARDDKRMEATRAALAFFAPDMPVISF
PGWDCLPYDRVSPNADIAAARMATLAALVHQMPGQFVLLTTLNAATQRVPARQVLKDAAF
VAEVDRRIDEEALRGYLTRMGFTKSPTVMEPGDFAVRGGIIDIYPPGQSGPVRLDLFGDV
LDGARRFDPATQRTTEKLSVVELAPVSEVILDEAAVTRFRQNYRIEFGAAGTDDPLYEAV
SAGRKYQGIEHWLPFFHERLETLFDYLPQATVTLDDQVTPARLARWDSIVDQYETRKIAM
AQKGRMDTVYKPVPPGLLYLDDDAWEAAIGDHRVIQFHPLPQASGPGVIDAGGRIGRNFS
PERQLESVSLFKSLADHIKARMQVGPVVVASYSEGARERLTGLIEDEGLAEVIAINDGTR
IGKSGLHLAVWALEHGFETDDLTVISEQDVLGDRLIRAPKKRRKAENFLTETQSLSPGDL
VVHVDHGIGRYKGLEVVTAAGAAHECILLEYAEHSKLYLPVENIELLSKYGHDEGLLDRL
GGGAWQAKKAKLKERIREMADRLIRVAAERALRKAPMMDPPPHAWEEFSARFPYQETDDQ
LRAISEVMEDLQSGSPMDRLICGDVGFGKTEVAMRAAFIAAMSGVQVAIVAPTTLLARQH
AAAFAQRFRGFPLEVRQLSRFVTAKEAAKTREGMAKGTIDIVVGTHALLAKSVRFQNLGL
LIIDEEQHFGVAHKERLKQMRSDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRLA
IRTYVSEFDAVTIREALLREHYRGGQSFYVVPRITDLPDVEAFLQEQLPELSYVVAHGQL
AAGDLDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGRVGR
SKTRAYAYLTTKPRVRLTPGAEKRLRVLGSLDTLGAGFSLASQDLDIRGAGNLLGEEQSG
QMRDVGYELYQSMLEEAIAKIKSGELEGLSGSDDQWAPQINLGVPVLIPENYVPDLDVRL
GLYRRLSDLSTKVELEGFAAELIDRFGALPKEVNTLMLVVRIKAMCKRAGIAKLDGGPKG
ATIQFHNDKFASPQGLVEFIQAQDGLAKVKDNKIVVRRDWKKDSDKIKGAFAIARDLAEK
VVAEKKKAKAKAKSG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaacgggcaatcaccgcaggcggcgcaccagagggctttgatgcgcggctgatc
ctgaaggaagccgccagcagcgatgcgccggtggtgcatgtcgcgcgggatgacaagcgg
atggaggcgacgcgggcggcacttgctttctttgcgccggatatgcctgtgatcagtttt
ccgggctgggattgcctgccctatgaccgggtgtcaccaaatgccgatatcgccgccgcg
cggatggcgacactggcagcgctggtgcatcagatgccggggcagtttgtgctgctgacc
acgctgaatgccgccacgcagcgtgtcccggcacgtcaggttctgaaagatgcggccttt
gttgcggaggtggaccggcgcatcgacgaggaggccttgcgcgggtatctcacgcggatg
ggattcaccaagagcccgacggtgatggagcccggggattttgcggtgcggggcgggatt
atcgatatctatccgccgggacagagcggcccggtgcggctggatctttttggcgatgtg
ttggatggggcgcggcggtttgatccggcgacgcagcggaccaccgagaagctgagcgtg
gttgaactggcgcccgtttccgaggtgatcctggatgaggccgccgtgacccggtttcgg
cagaactaccggattgagtttggcgcggcgggcacggatgatccgctttacgaggcggtg
tctgcagggcgtaaatatcaggggatcgaacactggttgccgtttttccatgagcggctg
gagaccctgtttgactacctgccgcaggccacggtgacgctggacgatcaggtaacgcct
gcccggttggcgcgctgggacagcatcgtggaccagtatgagacccggaagatcgctatg
gcgcagaaggggcggatggacacggtttacaaaccggtcccgccggggctgctgtatctg
gatgatgatgcctgggaggccgcgattggcgatcaccgggttatccagttccatccgcta
ccacaggccagcggaccgggcgtgatagatgcgggcggtagaatcggccgcaatttctct
cctgagcgacagttggaaagtgtcagcctgttcaaatcactggctgatcacattaaagcg
cggatgcaggtggggccggttgtggtcgcctcctattctgagggcgcgcgggagcgtttg
accggtctgattgaggatgagggactggcggaggtcatcgcgatcaacgatggcacgcgg
attggaaaatctggtctgcatctggcggtctgggcgctggaacacgggtttgagaccgat
gatctgacggtgatttccgaacaggatgtcctgggggatcggttgatccgcgcgcccaag
aagcggcgtaaggccgagaatttcctgaccgagacacaatccctcagccctggcgatctg
gtggtgcatgtggaccacgggattggccgctacaagggtctggaagtggttacagccgca
ggtgcggcgcatgaatgtatcctgctggaatatgcagaacactcaaagctgtacctgccg
gttgagaacatcgaactgctgtccaaatacggccatgacgagggccttctggatcgattg
ggcggcggtgcctggcaggccaaaaaggccaagctgaaggagcgtatccgggagatggcg
gatcgcttgatccgggtggctgccgagcgggcgttgcgcaaggcgccgatgatggacccg
ccgccgcatgcctgggaagaattctcagcccgcttcccctatcaggaaaccgacgaccag
ttgcgcgcgatcagcgaggtgatggaggatctgcagtccgggtcgcccatggaccggttg
atttgcggcgacgtcggctttggcaagacggaggttgcgatgcgcgcggcctttatcgca
gccatgtcaggtgtacaggtggcgattgttgcacccacgacgttgctggcgcggcagcat
gcggcggcctttgctcagcggtttcgcgggtttccgttggaagtcaggcagttgtcgcgc
tttgttacagcaaaagaagctgccaaaactcgcgaaggtatggccaaagggacgattgat
attgtcgtcgggacccatgccttgctggcaaaatccgtgcgctttcagaacctcggcctg
ctgatcatcgacgaggaacagcatttcggggtcgcgcataaggaacggctcaagcagatg
cgcagcgatattcacgttctgacgctgaccgcaacgccaatcccgcgaaccctgcaactg
agcctcactggcgtgcgcgatctgtccatcatcggcaccccgccggtggatcgtctggcc
attcgcacctatgtgagcgagtttgatgcggtcaccatccgtgaggccctgctgcgggag
cattatcgcggcgggcagagtttctatgtggtgccacgcatcaccgatctccccgatgtt
gaagcctttttgcaggagcagctgccggagctgtcttatgtcgtggcccatggtcaattg
gcggccggcgatctggatgatcgcatgaatgccttttacgatggcaaattcgacgttctg
ctggccacaaccatcgtggagtccgggctggatattcccacggcgaacacaatggtggtc
catcgcgcggatatgttcggtctggcgcagctctatcagatccgggggcgtgtgggtcgg
tccaagacacgtgcctatgcctatctcaccaccaaaccccgtgtgcggctgacgcccggg
gcggaaaaacgcctgcgcgtgctgggctcgctggatacgctgggggctggtttctcgctg
gcatcacaggatctggatattcgcggggcgggcaatctcctgggcgaagaacagtccggg
cagatgcgtgacgtgggctatgagctttatcagtccatgctggaggaggcgattgccaag
atcaaatccggcgagctggaaggcctgtccggcagcgatgaccaatgggcgccacagatc
aaccttggcgtaccagtattgatcccggagaactacgtgccggatcttgatgtgcgtctc
ggcctctatcgtcggctctcggatctgagcaccaaggtggagttggaaggttttgccgcg
gagctgatcgaccgtttcggggcactgccaaaagaggtcaacacgctgatgctggttgtg
cggatcaaggcgatgtgcaaacgcgccgggattgccaagttggacggtgggccgaagggg
gcaacgatccagttccacaatgataaattcgcctcgcctcagggcttggtggagttcatt
caggcgcaggacggtctggccaaggtgaaggacaacaagattgtcgtgcgccgggactgg
aagaaggacagcgacaagatcaaaggcgcctttgccatcgcgcgtgatctggctgagaag
gttgtcgccgaaaagaagaaggctaaggcgaaggcaaaatccggctga
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integrated database retrieval system
