Phaeobacter inhibens DSM 17395: PGA1_c33000
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Entry
PGA1_c33000 CDS
T02192
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase Pnp
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pga
Phaeobacter inhibens DSM 17395
Pathway
pga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGA1_c33000 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pga03019
]
PGA1_c33000 (pnp)
03016 Transfer RNA biogenesis [BR:
pga03016
]
PGA1_c33000 (pnp)
Enzymes [BR:
pga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PGA1_c33000 (pnp)
Messenger RNA biogenesis [BR:
pga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PGA1_c33000 (pnp)
Transfer RNA biogenesis [BR:
pga03016
]
Prokaryotic type
tRNA degradation factors
PGA1_c33000 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
BBS2_CtH
Motif
Other DBs
NCBI-ProteinID:
AFO92938
LinkDB
All DBs
Position
3458530..3460668
Genome browser
AA seq
712 aa
AA seq
DB search
MFNVTKKSMQWGEETLTLETGKVARQADGTVIATLGETSVMANVTFARQQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDMVAMIAASAALTLSGAPFMGPIAAARVGFEGGEYVLNPTVDDMQDLRLNPDQR
LDLVVAGTKDAVMMVESEAYELTEAEMLGAVKFAHEQIQPVIDLIISLAEEAAKEPFDFQ
PADYSELFAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKTSLSEEQLEDANLGSAL
KKLEAGILRGDVVKTGKRIDGRSTTDVRAIESETGMLPRTHGSALFTRGETQALAVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
PTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLILEDDGSYA
ILSDILGDEDHLGDMDFKVAGTDKGITSLQMDIKVAGITPEIMEKALDQAKDGRLHILGE
MAKALSETNAFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVETSGAKVDINDDGVIKI
ASADGTAIQKAYDMIHSIVAEPEEGAVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKIVDQETGEEIKAEKKEDAE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacgttacaaagaaatcgatgcagtggggcgaagagacgctcacactggagacc
ggcaaggtcgcccgtcaggcagatggcaccgtgattgccaccctgggcgagacctcggtt
atggcaaacgtcacttttgcccgccagcaaaaaccgggtcaggacttcttccccctgacc
gtgcactatcaggaaaaatactacgctgcgggcaaggtccccggtggttttttcaagcgt
gaagcacgcccaaccgaaaaagaaacactgactgcgcgcctgatcgaccgtccgatccgc
ccgctgttcgttcccggcttcaagaacgaagttctggtgatgtgcaccgtgctgagccac
gatttggtcaacgatcccgacatggttgccatgatcgcagcctccgcggcgctgaccctg
tccggcgcgcccttcatgggtccgatcgctgctgcacgcgttgggtttgagggcggcgag
tacgttctgaacccgactgttgatgatatgcaggacctgcgcctgaaccctgatcagcgt
ctggatctggttgtcgccggtaccaaagatgccgtgatgatggttgaatccgaagcctat
gagctgaccgaagcagaaatgctgggtgcggtgaaattcgcgcacgagcagatccagccg
gtgatcgacctgatcatctctttggcggaagaagcggcgaaagagccgtttgacttccag
cccgccgactattccgagctgttcgccgccgtgaaagccgctggtgaagagcagatgcgt
gccgcattcgcgatcaccgacaagcaggagcgcaccgccgctgttgccgctgcccgcgaa
gcgatcaaaacctcgctgagtgaagaacagctggaagatgccaacctcggctccgctctg
aagaagctggaagctggcattctgcgtggcgacgtcgtcaagaccggcaagcggatcgac
gggcgttcgaccactgacgtccgcgctatcgagtcggaaaccggcatgctgccgcggacc
cacggttcggcgctgttcacccgtggcgaaacccaggcgttggccgtgaccacgctgggc
accggtgacgacgaacagtttatcgacgcgctgcacggcaatttcaaatccaatttcctg
ctgcactacaacttccctccctactcggttggtgaagtgggtcgcgtcggctccccgggc
cgtcgtgaaatcggtcatggtaagctggcatggcgcgccctgcaggcggttctgcctgcg
ccgaccgactttccctacaccattcgcgtggtgtctgagatcaccgaatccaatggctct
tcgtcgatggcatcggtctgtggtggttcactttccatgatggacgcaggcgtcccgctg
aaggccccggttgccggtgttgcgatgggtctgatcctggaagatgacggctcttacgcg
atcctgtcggacattctgggcgacgaagaccacctcggcgacatggacttcaaagtggcg
ggtaccgacaagggtatcacctcgctgcagatggacatcaaggttgcaggcatcacgcct
gagatcatggaaaaagcactggatcaggccaaagacgggcgtctgcacatcctcggcgaa
atggccaaggctctgtcggaaaccaatgcgttctccgtccatgccccccgcattgagacc
atgcaaatcccgaccgacaagatccgtgaagtgatcggctccggcggtaaggtcatccgc
gagatcgtggaaacctccggcgcgaaagtcgacatcaacgacgacggcgtgatcaagatc
gcatcggccgacggcaccgcgatccagaaggcctatgacatgatccactcgatcgtggca
gagccggaagaaggtgccgtttacaccggtaaggtcgttaagatcgtcgacttcggcgcc
ttcgtgaacttcttcggcaagcgcgacggtctggtgcatgtgtcccagatcgaaaaccgc
cgcctgaaccacccttcggacgttctgaaggaaggccaggaagtgaaagtgaagctgctg
ggctttgatgatcgcggcaaggtccgcctgtccatgaaaatcgtggatcaggaaaccggt
gaagaaatcaaagccgagaagaaagaagacgcagaataa
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