Phaeobacter inhibens DSM 17395: PGA1_c36430
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Entry
PGA1_c36430 CDS
T02192
Name
(GenBank) putative ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pga
Phaeobacter inhibens DSM 17395
Pathway
pga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PGA1_c36430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pga03019
]
PGA1_c36430
03016 Transfer RNA biogenesis [BR:
pga03016
]
PGA1_c36430
Enzymes [BR:
pga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PGA1_c36430
Messenger RNA biogenesis [BR:
pga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PGA1_c36430
Transfer RNA biogenesis [BR:
pga03016
]
Prokaryotic type
tRNA degradation factors
PGA1_c36430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
AFO93274
LinkDB
All DBs
Position
3811628..3813898
Genome browser
AA seq
756 aa
AA seq
DB search
MTRIPSKAEILDWIAAHPTHTSKRDIAKAFGIKGSDRIDLKRILKELEAEGHLEKRKKTY
RDPERLPPVSVLQIKAPDGDGDLFARPLEWHGEGVEPVVLVMPRASDPALGEGDRILARL
TVVQDAEYHYEARLIRRIGTNPRRVIGIFRKGDEGGRIVPIDKSASTEWAVAENATHGAR
DGELVEAEQAGPKSRLGLPRARVVERLGDPSAPKAVSLIAIHQHGILDHFPDEVIAEADA
AKPMGLKGREDLRDLPLITIDPADARDHDDACYAHADDDPKNPGGHVIWVAIADVAAYVQ
PGSALDRAARKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRACVAVRMQIDADGNKIA
HRFVRGLMRSAASLHYAEVQEAMDGAPTDRTGPFLEPVIKPLYAAYAALVKARAERQPLD
LDLPERKIVLDEKGTVASVNFRDRLDAHKLIEEFMVLANVAAAETLIKKRTPLLFRVHEE
PSPEKLEALRETARAAGLALAKGQVLQTRHLNALLHGAAGTDDAELINISTLRSMQQAYY
GPENFGHFGLALRNYAHFTSPIRRYADLIVHRALITAHGWGDDGLDTAEIERLEQTATHI
SETERRSMMAERDTTDRYLAAYLAERVGNEFEGRISGIARFGAFVKLDETGADGLVPVRS
IGREFFHFDAEAGTLMGADTGLIIAIGQRVKVRLAQATPVTGGLELELLSIEDKPMPAGG
GGGRRSPAGRSVKRKSAKAKAKRSKIKRKVERKRRS
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtattccttccaaggccgagatcctcgactggatcgcagcccatccgacccat
acctcaaaacgtgacattgccaaagcattcggcatcaaaggctcagacagaatcgatctg
aaacggatcctcaaagagcttgaggccgaaggccatctggaaaagcgtaaaaagacctac
cgtgaccctgagcgactgcccccggtaagcgtgctgcagatcaaagcaccggatggagat
ggtgatctctttgcgcggccgctggaatggcatggggaaggcgtcgaacccgtcgtgctg
gtgatgccgcgtgcgtcggaccctgcgctgggtgagggggaccgcattctggcccgcctg
accgtggttcaggatgccgagtatcactacgaggcgcggttgatccgccgcatcggcacc
aatccgcgccgggtgatcggcatcttccgcaaaggtgatgagggcgggcgtatcgtgccc
atcgacaaatcagcctccacggagtgggccgttgcggaaaacgccacccatggcgcgcgc
gatggcgaactggtcgaggcggaacaggccggaccgaaatcgcgccttggcctgccacgc
gcccgcgtggtggagcggctgggcgatccatccgcgcccaaggcggtgtcgttgattgcg
attcatcagcatggtatccttgaccatttcccggatgaggtcatcgccgaggctgatgcc
gccaaaccgatgggtctgaaaggacgtgaagatctgcgagatctgccgttgattaccatc
gaccctgcggatgcgcgcgatcatgacgacgcctgctatgcccatgcggatgatgatccc
aaaaaccccggtggccatgtcatctgggtcgcgattgccgacgttgctgcctatgtgcag
ccggggtcagcgctggaccgcgcggcacgcaaacgtggcaattcaagctatttcccggat
cgcgttgtgcccatgctgccggaccggttgtcaggtgacctgtgcagtctgcacgaaggg
gtgccgcgggcctgcgttgcagtgcggatgcagattgatgccgacggcaacaaaatcgct
catcgctttgtgcgggggttgatgcggtcggcggcatccttgcattacgctgaagtgcaa
gaggcgatggatggcgcgccaacggatcgcacaggccccttcctggagcctgtgatcaag
ccgctctacgccgcctacgctgcgttggtcaaagcccgggcagagcgtcagcctctggat
ctggacctgccggaacgcaaaatcgttttggatgagaaaggtactgtcgcatcggtgaat
ttccgcgaccgtctggacgctcataaactgattgaagaattcatggtgctggccaatgtg
gcagcggcggaaaccctgatcaagaaacgcacgccgctgttgttccgcgtgcatgaggaa
ccatccccagagaagctggaagcgctgcgtgagaccgcccgtgcggcggggcttgcgttg
gccaaggggcaggtcctacagacccgccacctgaatgcgctgctgcacggggcagccggg
accgatgatgcggaactgatcaatatctcgaccctgcgatccatgcagcaggcttattat
ggtccggagaacttcggccatttcggtctggccttgcgcaattatgcacatttcacgtcg
cccatccgccgttatgccgatctgatcgtacaccgcgccctgatcaccgctcatggttgg
ggagatgacgggctggacaccgccgagatcgaacggctggaacagaccgcgacccatatc
tcggagaccgagcgccggtctatgatggcagaacgggacacaacagatcgctatcttgcc
gcctatctggcggaacgggtcggcaatgaattcgagggtcgtatcagcggcattgcccgc
tttggcgcctttgtgaaactggatgaaaccggggccgatggtctggtgcctgtgcgttct
atcgggcgggagtttttccattttgacgccgaagccgggaccctgatgggcgccgatacc
ggcctgatcatcgccatcggtcagcgggtgaaggtgcggttggcacaggccactccggtg
accggagggctggaactggagcttctgtcgatcgaggacaaaccgatgccagcgggcggc
ggtggtgggcgacgcagcccggcgggtcgatccgtgaaacgcaaatccgccaaggcgaag
gcgaagcgcagcaagatcaagcgcaaggtggaacgcaagcgccgcagctga
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