Plasmodium gaboni: PGSY75_1005500
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Entry
PGSY75_1005500 CDS
T08136
Name
(RefSeq) putative regulator of nonsense transcripts
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pgab
Plasmodium gaboni
Pathway
pgab03013
Nucleocytoplasmic transport
pgab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PGSY75_1005500
03015 mRNA surveillance pathway
PGSY75_1005500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgab03019
]
PGSY75_1005500
Enzymes [BR:
pgab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PGSY75_1005500
5.6.2.5 RNA 5'-3' helicase
PGSY75_1005500
Messenger RNA biogenesis [BR:
pgab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PGSY75_1005500
mRNA cycle factors
Common to processing body (P body) and stress granule
PGSY75_1005500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
NAT10_TcmA_helicase
NPHP3_N
AAA_22
DEAD
SRP54
AAA_5
PhoH
AAA
ATPase
AAA_16
Motif
Other DBs
NCBI-GeneID:
29776427
NCBI-ProteinID:
XP_018641439
UniProt:
A0A151LKJ1
LinkDB
All DBs
Position
10:complement(<172914..>177641)
Genome browser
AA seq
1575 aa
AA seq
DB search
MDKTFDYNNINVDNFDELYDFCISKDTNKKKIKEGNNFLGDQKQIFNDDKDRCNKEVVKK
YTNIKDTKKHGNNKKSEYSPCSTVEEKRLDMLNDNIEDTDSYYDRKKKNSHKWKEMSNNI
NSNSSNSNSSSNNNNNNNNSYDNIDPHDNDDIHHINHNKEHEEQYNGNKTTMKKNSESLS
DISSYNDIKSYNNVEDGIYDEYDVKNKMKYDKKKNKHNHNNNNNNNNNNNKCDNNKNYHN
NKNNKYYNNHLDHKHNDLYEEGDTYKFKNKKSKDDLKYYRCRYCDIDSIDSVVQCNNCKR
WFCNGSYGTCGSHIVTHLVRSKHKEIKLHKNSLLGETILECYNCACRNVFLLGFLPTSEE
GVVVIICRDPCLSNYIALYEKHLIDMDQNKNISLEDDKEKEVLIKDEDCMHYKEINNNNN
TNCENIHCSNNDEKELVEQNSLSSVHHQSDSSDYYYYYYSRRQKNKKLEKSHMNVCNDDN
QNVHYDNKLIDDDHMMWGEHNKRQKNIEKNIEKNKEKNKEKKYNEHIENDNNIYINNSNI
CEEIEKIKDWDLKKWQPVIEDRFFLEWLVNIPSNEEAERKGKLSTSYNVNKLEELWKNKK
DVYIDELNLEILNDEPNSVELKYEDAYHYQSIFSPLIQLEADYDKSIKEGQKQGNVTVRW
DIGLNKKRYAHFIYVKEESELRLVAGDELKISYTYPDGSIWCCEGHISRLHNTEEIALEL
RTSCTSNGPWVDNITTGFTVEFIWKSTAYDRMQLALNEFALNSYSLSGFLYHKLLGHDIS
EDSLEYNKNTFYKMMHKKVMNIRNYSAPNLAPLNHSQIDAIKKSLLSPLSLIQGPPGTGK
TLTCATLVYHLVKMNMGKVLVTAPSNVAVDQLSVRIHRSGLKVVRLCAKSRESVPSIAEY
LYLHNQMKLLKSDIAEELNKLLELKEEVGELSQKDERRLKKLISFAENEILIEADVICCT
CVGAMDKRLKKFRFRQVLVDEATQSTEPECLVPLVTGAKQIVLVGDHCQLGPIIVCKKAA
NAGLGKSLFERLVMLGITPFRLEVQYRMHPALSEFPSYVFYDGSLQNGITLKEREYPLKS
FPWPNPKCPMFFYNSTGLEEMSASGTSYLNRSEASNMEKLVRTLLQCGLKASQIGVITPY
EGQRAYITSLFQKNISFQNSADIEVASVDAFQGREKDFILLSCVRSNKKLGIGFLNDPRR
LNVALTRAKYGLIICGNAKVLSRHHFISREKINSNETITNVNSVWINLLSQFKKKDLIVE
GCLSNLKPVNINIPTPTKLPSRYTNFNYFHSYDNFQKNRTHNYPDKLGSNSYKDKSTTIT
NQYKNNKYNKNNKNNDELFNSSSVNDYYYHHHFNTNHLSDENTNSQFNLNLSNYSYCSEN
IMNNDLYTYITKNKKKNIVNSYVNNLSQMSQFNDYATERNHNNNDNPDYLDIHDKYNNSI
DDDKKSTTKYNISSSLNNSEFSYSNNNKMSSNHSIDSYNQDTNFISISKNADNLFPYLFY
YKSNQNDSSQQPYMYYNENHENINSSKTQKGVKNTVLNKSSTSNMTLTQKDSVILNDHKL
SCNSKKELSENTHIN
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atggataaaacattcgattacaataatattaatgtagataattttgatgagttgtatgat
ttttgtatttccaaggatacaaataaaaaaaaaataaaagaaggaaacaattttttagga
gatcaaaaacaaatatttaatgatgataaggatagatgtaataaagaggttgtaaaaaaa
tatacaaatataaaagatactaaaaaacatgggaataataaaaaatcggaatattctcca
tgtagcacagtagaagaaaaaaggttagatatgctaaatgataatatagaagatacagat
tcatattatgatagaaaaaaaaaaaattcacataaatggaaggaaatgagtaacaatatt
aatagtaacagtagtaatagtaatagtagtagtaataataataataataataataatagt
tatgacaatattgatcctcatgataatgatgacattcatcatataaaccacaataaggaa
catgaagaacaatataatggtaataagacgactatgaaaaagaattcagaatctttaagc
gatataagtagttataatgatattaaaagttataataatgtagaggatggaatatatgat
gaatatgatgtaaaaaataaaatgaaatatgacaaaaaaaaaaataaacataatcacaat
aataataataataataataataataataataaatgtgataataataaaaattatcataat
aataaaaataataaatattataataatcatttggatcataaacataatgatctttatgaa
gaaggtgatacttataaatttaaaaataaaaaaagtaaagatgatttaaaatattacaga
tgtagatattgtgatatagattccatagatagtgttgttcaatgtaataactgtaaacga
tggttctgcaatggttcttatggtacttgtggtagtcatattgttactcatttagttcga
tcgaaacataaagaaattaaattacataaaaatagtttattaggtgaaactattttagaa
tgttataattgtgcatgcagaaatgtatttttgttaggtttccttccgacatctgaagaa
ggtgttgttgttattatttgtagagatccttgtttgtctaattacatagccttatatgaa
aaacatctaattgatatggatcaaaataaaaatatctctctagaagatgataaggaaaag
gaggttctcataaaagatgaggactgcatgcactataaagaaataaataataataataat
acaaattgtgaaaatattcattgtagtaataatgatgaaaaggaacttgttgaacaaaat
agtctttcttcagttcatcatcaaagtgacagttctgattattattattattattattcc
agacgtcaaaagaataaaaaattagagaaaagccatatgaatgtttgtaatgatgataac
caaaatgttcattatgataataaattaattgatgatgaccatatgatgtggggagaacat
aataagcgtcaaaaaaatatagaaaaaaatatagaaaaaaataaagaaaaaaataaagaa
aaaaaatataatgaacatatagaaaatgataacaacatctacataaataatagtaatatt
tgtgaagaaattgaaaaaataaaagattgggatttaaaaaaatggcaaccagttattgag
gatcgtttctttttagaatggttagtaaatataccatctaatgaagaagcagaaagaaaa
ggtaaattatctacatcttataatgtaaataaattagaggaattatggaaaaataaaaaa
gatgtatatatagatgaattaaatttagaaatattaaatgatgaaccaaatagtgttgaa
ttaaaatatgaagatgcatatcattatcaatccatattttctccattaattcaacttgaa
gctgattatgataaatctataaaagaaggtcagaaacaagggaatgtaacagtcagatgg
gatattggtttaaataaaaaaagatatgctcattttatttatgtgaaagaagaaagtgaa
ttaagattagttgctggagatgaattgaaaatatcatatacatatccagatggtagtata
tggtgttgtgaaggacatatatctagattacataatacagaagaaattgcattagaatta
agaacatcatgtacatctaatggtccatgggttgataatattactacaggatttactgta
gaatttatttggaaaagtactgcttatgatcgcatgcaattagctttaaatgagtttgct
ttgaattcatattctttaagtggatttctatatcataaattattaggtcatgatatatct
gaagattcattagaatataataaaaatacattttataaaatgatgcacaaaaaagttatg
aatataagaaattattctgctcctaatttagcacctcttaatcattctcaaatagatgca
ataaaaaaaagtttattatctcctttatctttaattcaaggaccacctggtactggaaaa
actttaacatgtgctactttagtatatcatttagtaaaaatgaatatgggcaaagtatta
gttactgcacctagtaatgtagctgtagatcaattatctgttagaatacatagaagcggt
ttaaaagtagttcgcttatgtgctaagagtagagaatctgttccaagtatagctgagtat
ttatatttacataatcaaatgaaattattaaaaagtgatattgctgaagaattaaataaa
ttattagaattaaaagaagaagtaggagaattatcacaaaaagatgaacgtagattaaaa
aagttaatatcatttgctgaaaatgaaatattaatagaagcagatgttatttgttgtaca
tgtgttggagccatggataaacgattaaaaaaatttcgttttcgtcaagtattagttgat
gaagctacacaatcaacagaaccagaatgtttagtaccattagtaacaggagctaaacaa
attgttttagttggtgatcattgtcaattaggaccaataattgtttgtaaaaaagctgca
aatgctggattaggaaaaagcttatttgaaagattagttatgttaggcataacaccattt
agattagaagtacaatatcgtatgcatccagcattaagtgaatttccatcttatgttttt
tatgatggtagtctacaaaatggtattacattaaaagaaagagaatatcctttgaaatcc
tttccatggcctaatcctaaatgtcctatgtttttttataattcaactggtttagaagaa
atgtctgcatctggaaccagttatctaaatagaagtgaagcttctaatatggaaaaatta
gttagaacattattacaatgtggcttgaaagcttcacaaataggtgttataacaccatat
gaaggacaaagagcatatattacttctttatttcaaaaaaatatttcttttcaaaattca
gcagatatagaagtagcatctgttgatgctttccaaggaagagaaaaagatttcatatta
ttatcatgtgttagatctaataaaaaattaggtataggatttttaaatgatcctagaaga
ttaaatgtagccctaaccagagctaaatatggattaattatatgtggaaatgcaaaggtt
ctatcaagacatcattttatatccagagaaaaaattaattcaaatgaaactataacaaat
gttaattctgtatggattaatttattaagtcaatttaaaaaaaaagatttaattgtagaa
ggatgtttatcgaacttgaagccagtaaatataaatataccaacacctacaaaattacca
tctagatatacaaattttaattatttccatagttatgataatttccaaaaaaatagaacc
cataattatccagataaattaggttctaatagttataaagataaaagcaccactataact
aatcaatataaaaataataaatataataaaaataataaaaataatgatgaattatttaat
tcttcttctgttaatgattattattatcatcatcattttaatacaaatcatttatcagat
gaaaatactaattctcaatttaatcttaacctatccaattatagttattgtagtgaaaat
attatgaacaatgatttatatacttatataactaaaaataagaagaaaaatattgtcaac
tcatatgttaataatctaagtcaaatgtctcaatttaatgattacgcaaccgaaagaaat
cataataataatgataatcctgattatttagatattcatgataaatataataatagtatt
gatgatgataagaaaagtacgactaaatataatatttcatcatcattgaataattcagaa
ttttcatattctaataataataaaatgtcatctaatcattctatagattcatataatcaa
gataccaattttatttccatctcaaaaaatgcagataatttatttccgtaccttttctat
tataaaagtaatcaaaacgatagttcacaacaaccatatatgtattataatgaaaatcat
gaaaacataaattcttcaaaaacacaaaaaggtgtaaaaaatacggtattaaataaatca
tctacatctaatatgacgttaacacaaaaagattctgttattcttaatgaccacaaatta
agttgtaatagtaagaaagagctatctgaaaatacgcatataaattag
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