Photobacterium gaetbulicola: H744_1c0374
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Entry
H744_1c0374 CDS
T03698
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pgb
Photobacterium gaetbulicola
Brite
KEGG Orthology (KO) [BR:
pgb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pgb03016
]
H744_1c0374
Enzymes [BR:
pgb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H744_1c0374
Transfer RNA biogenesis [BR:
pgb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
H744_1c0374
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AJR05399
UniProt:
A0A0C5WJW4
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All DBs
Position
1:complement(444558..446558)
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AA seq
666 aa
AA seq
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MFQDNPLLAQLKKQIQETLPKKEGSIKATDRGFGFLEVDNKESFFIPPNYMKNVMHGDRV
MAVIRTEKEREVAEPQELIEQFITRFIGRVKLIRDRLHVVPDHPQLKDAIKARPVKGLNP
ELLKEGDWVVANMTRHPLVGDNKTFFCEIKEKITDSNDKIAPWWVTLARHDLPNAEPAPQ
DSWSMLEEGLEREDLTELPFITIDGESTKDMDDAIYTVAKEDGSFEITIAIADPTSYIEV
GDKMDKEARERGFTIYLPGRNIPMLPRELSDELCSLLENEKRPALCCRVSIDKDGVIQDD
IHFFAAWITSQGRLAYDNVSDLLEHGACENWAPNETILEQIKALHGFANARSDWRAANAV
VFPDRPDYRFELSEDNDVVAIHTDPRRTANRMIEEAMITANICAGRVMQEKFGFGVYNYH
NGFNPEKLDTAMDFLTKAEAPFEKEQLLTLEGFSALRRWLNDQDTTYLDNRLRKFQAYSE
VGNKPAAHYAMGLDVYATWTSPIRKYGDMINHRLLKAVISGQEPSQTPDDSVGEEIATHR
RNHRMAERDVADWLYVRLLKDAVKDATVFTAEIFDINRAGMRVRLLENGAAAFIPAPLIL
DNKERIECNGELGVVNIDKMKEYQLGDQLEVTIAEVRSATRQLVAKPVKQFPAPEAEKAP
AESAEA
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatcctttactagcacagcttaaaaaacaaattcaggaaacacttcct
aagaaagaaggcagcatcaaggcaactgaccgtggctttggctttcttgaagtcgacaac
aaagaaagcttcttcattccacctaactatatgaaaaacgttatgcacggtgaccgtgtt
atggcggttattcgtacggaaaaggaacgcgaagtcgctgaaccacaggaattgatcgag
caattcattactcgtttcattggccgagtgaaactcatccgtgatcgcctgcatgttgtt
cccgatcaccctcagctgaaagatgctattaaagctcgacctgtcaaaggtctaaacccg
gagttgcttaaagaaggcgactgggttgttgccaatatgactcgccatccattggtgggt
gacaacaagacgttcttctgtgaaatcaaagaaaagatcacggacagcaacgacaagatt
gcgccttggtgggtcacactggctcgtcacgatctgccaaatgccgagcctgctccgcag
gacagctggtcaatgctcgaagaaggcttggagcgtgaagatctgactgagcttccattc
atcactatcgatggtgaatcaaccaaagatatggatgacgcaatttacacggttgccaag
gaagacggtagctttgaaatcactatcgccattgccgatcctacttcctacatcgaagtt
ggcgacaaaatggataaagaagcgcgtgaacgcggctttaccatctacctaccgggccgt
aacatcccaatgctgcctcgcgaactgagcgatgagctgtgttcgctgctagaaaacgag
aaacgcccagccctttgctgccgcgtcagcatcgacaaagatggagtgatccaagacgat
attcacttctttgccgcctggatcacgtcgcagggccgtttggcttacgacaatgtttct
gatctgcttgagcacggtgcttgtgaaaactgggcgccgaacgaaaccatcctcgaacaa
atcaaggccctgcacggttttgctaatgcgcgcagcgactggcgtgcagccaacgcggtg
gtattcccggatcgtccagactaccgcttcgaactgagcgaagataacgatgttgttgct
atccacaccgatccacgccgtactgcgaaccgtatgatcgaagaagcgatgatcacagcg
aatatctgtgcgggtcgcgtaatgcaagaaaagttcggttttggtgtttataactaccac
aacggctttaatcctgaaaaattggatactgcaatggacttcctgaccaaagccgaagca
ccatttgaaaaagaacaactgctgacgcttgaaggcttcagtgcccttcgtcgttggttg
aacgatcaggacacgacatacctagacaaccgtctgcgtaaattccaggcttacagtgaa
gtaggtaacaaacctgcagcccactacgcgatgggccttgatgtctacgcgacctggaca
tcgcctatccgtaagtatggtgacatgataaaccaccgcctacttaaagcggttatctca
ggccaagaacctagccagacaccggacgatagcgtgggcgaagagatcgcgacccaccgc
cgcaaccaccgcatggccgaacgcgatgtggccgattggctatacgttcgcctgctaaaa
gatgccgtcaaggacgcaactgtgtttactgctgaaatcttcgacatcaaccgtgccggt
atgcgtgttcgcctgcttgagaatggcgcagccgccttcatcccggctcctcttatcctc
gacaacaaagagcgtattgagtgcaacggcgaattaggcgttgtgaacatcgacaagatg
aaagaataccagcttggcgatcagcttgaagtgaccattgctgaagttcgctcagcgaca
cgtcagcttgttgccaagccagtcaagcagttcccggcaccggaagcagagaaagcacca
gcagagtctgctgaagcctaa
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