Photobacterium gaetbulicola: H744_1c0392
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Entry
H744_1c0392 CDS
T03698
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
pgb
Photobacterium gaetbulicola
Brite
KEGG Orthology (KO) [BR:
pgb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgb03000
]
H744_1c0392
Transcription factors [BR:
pgb03000
]
Prokaryotic type
Helix-turn-helix
Other families
H744_1c0392
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA
AAA_16
HTH_50
AAA_22
AAA_5
HTH_22
AAA_7
HTH_29
Mg_chelatase
TIP49
AAA_2
TrmB
HTH_7
Beta_elim_lyase
HTH_IclR
DUF1492
HTH_17
RWP-RK
NAD_binding_2
EcsB
Motif
Other DBs
NCBI-ProteinID:
AJR05417
UniProt:
A0A0C5WGU3
LinkDB
All DBs
Position
1:465130..466473
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AA seq
447 aa
AA seq
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MMTQSQNKSIDGRLVALGCNYEPWIALLEQSGWKTHCCYDLRTVDSILEEYSPCICVVDL
SNNDFSLNSISLRANKTKQVKWIAIIKKEQLKTDAICQFINNFCIDYFTVPIPSSHMLST
IGHQLGMLEIESSSWVEITSQHDMGLYGESKSIKQLRDMVRRVAMTEVNVFLTGENGTGK
ELIAKSIHNLSKRKNTPFIAVNCASLNHDDENMSLLDGSYRQEDGTPFNGTLMLDNVDEL
SKEMQEKLLAYLQAPTSDSLEGEASGDVRIIASTSADLDAAVANGTFSKELYYRLNVFHI
KVPTLRERGSDIFLLAETFLTKFAREYSTMASSFSEDSKQLLLRYSWPGNVRELINQVKR
AALLAEGNEVKAEHFDLPSKSNLKQSLRNIKDEAEKDVLVAVLETHRGQVASAAKDLGVS
RATMYRLLNKHNIVPDVRHYNNGYARD
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgatgactcaaagtcaaaataaatcaatagatggtcgtttagtagcactgggatgtaac
tacgaaccttggattgcgctattagaacaatctggatggaaaacccactgttgttatgat
ttacgtacggttgactcaattctggaagaatacagtccgtgtatctgtgtagtcgattta
agcaataatgactttagcttgaatagtatttcattaagggcgaataaaaccaaacaagta
aaatggattgccattatcaagaaggagcaattgaaaacggatgcaatctgccagtttatc
aataacttctgcattgattattttactgttccaatcccgagtagtcatatgctgagcaca
attggccaccaattagggatgctcgagattgaatcaagttcatgggttgagatcacttcg
cagcatgacatggggttatatggtgagtcaaagtctatcaaacaactgcgcgatatggtc
cgccgtgtggcgatgacggaagtgaatgtgttccttacgggggagaatggtaccggtaag
gagctgattgccaaatctatccacaatctttccaagcgcaagaataccccctttatcgct
gttaattgtgcatcgctcaatcatgatgatgaaaacatgtcgttgcttgatggcagttac
cgccaagaagacgggacaccgtttaacggcaccctgatgctggataatgtggatgagctc
tcgaaagagatgcaggagaagctgcttgcttaccttcaggccccaacctccgacagccta
gaaggtgaagcctcaggggatgtgcgtatcattgcttcgaccagtgcagacctagatgca
gcggtagcaaacgggacattcagtaaagagttgtattatcgcctgaacgtattccatatc
aaggtaccaacactgcgcgagcgcggctcagatattttcttgcttgcagagacgttcctg
accaagtttgcgcgtgaatacagtacgatggcctcatctttctctgaagactctaagcag
ctactgttgcgttatagttggccaggtaatgtacgcgagttgatcaatcaggtgaaacgg
gcggccttgcttgcagagggtaacgaggtgaaagctgagcattttgacctgccgagtaaa
tccaacctcaagcaaagccttcgcaacatcaaagatgaagccgaaaaagacgtgttggtt
gctgtgcttgagacccaccgcggacaagtggcttcagcagcaaaagatctgggggtgtcg
cgagcaacaatgtaccgattgctgaataagcacaatattgtccctgatgttcgccattac
aataatggctacgccagagactga
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