Photobacterium gaetbulicola: H744_2c0213
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Entry
H744_2c0213 CDS
T03698
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pgb
Photobacterium gaetbulicola
Pathway
pgb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H744_2c0213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgb03019
]
H744_2c0213
03400 DNA repair and recombination proteins [BR:
pgb03400
]
H744_2c0213
Enzymes [BR:
pgb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H744_2c0213
Messenger RNA biogenesis [BR:
pgb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H744_2c0213
DNA repair and recombination proteins [BR:
pgb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H744_2c0213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
AJR06966
UniProt:
A0A0C5W635
LinkDB
All DBs
Position
2:complement(222948..224801)
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AA seq
617 aa
AA seq
DB search
MPASQPSQTDSPMTCDQVLQEVFGYQEFREGQQPVIEAAVSGQDCLVIMPTGGGKSLCYQ
IPALLRDGLSLVVSPLISLMKDQVDQLKANGVAAACINSTMSWEAMQETFQAMAQDQLKL
VYVSPERLLSRDFSERLACLPLSMIAVDEAHCISQWGHDFRPEYAAIGSLRQAFPDVPVI
ALTATADETTRQDIVARLALQEQHTYLGSFDRPNIRYTLQEKYKPMAQLTRYLSGMRGQC
GIVYCNSRKRVEQISEKLNESGIRAAAYHAGLEHDERAWVQEAFQRDDVQIVVATVAFGM
GINKPNVRFVVHYDIPRNIESYYQETGRAGRDGLPAEAILFYDPSDLAWLRRCLDEKEEG
PQKLVESHKLNAMGAFAEAQTCRRQVLLNYFGEAREEPCGNCDVCLDPPKHFDALEVAQK
ALSCVYRVNQSFGITHVVEVLRGMQNQRIREHGHDKLSTYGIGREHSHEFWVSILRQLIH
RGFLTQNIVRSSILQLTAKARDVLRGEVPLELAVPRLDIAARSAKSDKLANRQYDKKLFA
KLRKLRKAIADEEDLPPYVVFNDASLMEMAERLPTSAGELLAVNGVGHRKLEKYGNAFLG
LIEDHLTAGEDVGFGIG
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaagccagccgagccagaccgatagcccaatgacctgtgaccaggtactgcag
gaggtctttggctatcaggaattccgggagggccagcagcctgttatcgaggcggcggta
tccggccaggattgtctggtgatcatgccgacaggcggcggtaagtcgctgtgctaccag
atcccggctttgctgcgagacggcctgagcttagtggtgtccccattgatttccttgatg
aaagatcaagttgaccagcttaaggccaacggggtggccgcggcctgtattaactccacc
atgtcgtgggaagcgatgcaggagacttttcaggcgatggctcaagatcagttgaagctg
gtctatgtttctcctgagcgtttgctcagtcgcgatttttccgaacgtctggcttgtttg
ccgctcagcatgattgcggtggatgaagcgcactgcatttcgcagtggggccatgacttc
aggccggaatatgcggccatcggcagtttgcgccaggccttccctgatgtcccggtgatt
gccctgacggccacggcggatgagaccacgcggcaggatatcgttgcccgtttggcactt
caggagcagcatacctatctcggcagcttcgaccggccgaatatccgctacaccctgcag
gaaaaatacaagccgatggcccagctgactcgctacctgtccgggatgcgcggtcagtgt
gggattgtctactgcaacagccgcaagcgggtggagcaaatcagcgaaaagctcaacgag
agcgggatccgtgcggcggcctaccacgccgggctggagcatgacgagcgggcatgggta
caggaagcgttccagcgtgatgatgtgcagatcgtggtggcgaccgtggcctttggtatg
gggatcaacaagcccaacgtgcgctttgtggtccattatgatattccgcgcaatatcgag
tcctactatcaggaaaccgggcgggctggacgggacggtctgcccgccgaggccatcctg
ttctacgacccatccgatttggcctggttgcgccgctgcctggatgaaaaggaagagggt
ccgcagaagctggtggagagccacaagctcaatgccatgggggcatttgccgaggctcag
acctgccgccgccaggtactgctcaactattttggtgaagcgcgggaagagccctgcggc
aactgcgatgtctgcctcgacccacccaagcacttcgatgcccttgaggtggcgcagaag
gcgctgtcctgcgtgtaccgggtcaaccagagctttggtattactcatgtggtggaagtg
ctgcgcggtatgcagaaccagcgtatccgcgagcatggccacgataagctgagcacctac
gggatcggccgcgaacacagccacgagttttgggtcagcatcttgcgccagcttatccac
cgcggcttcttgacccagaatatcgtccgcagctcgatactgcagctgaccgccaaggcg
cgggatgtcctgcgtggcgaggtgccactcgagctggcggttccaaggctggatattgcg
gcccgcagtgccaagagcgataagctggccaatcgtcagtacgacaagaagctgtttgcc
aagctgcgcaaactgcgcaaggccattgctgacgaagaggatttaccaccttatgtggtc
ttcaatgatgccagtctgatggagatggccgagcgcctgccgacctcagcgggcgaactg
ctggcggtcaacggggtggggcatcgtaagctggagaaatacggcaatgctttcctgggg
ttgatcgaagatcacctgacggcgggagaagacgtcggatttgggatcgggtag
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