Photobacterium gaetbulicola: H744_2c1279
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Entry
H744_2c1279 CDS
T03698
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pgb
Photobacterium gaetbulicola
Brite
KEGG Orthology (KO) [BR:
pgb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pgb03016
]
H744_2c1279
Enzymes [BR:
pgb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
H744_2c1279
Transfer RNA biogenesis [BR:
pgb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
H744_2c1279
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AJR07958
UniProt:
A0A0C5WLB2
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All DBs
Position
2:1343462..1344574
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AA seq
370 aa
AA seq
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MITSRTRLEIICLQARRQSAVMLDTEFVRTRTLYPKLGLIQLFDGESLALIDPLAIDDLE
PLWELLRDQSVIKVLHACGEDLEVFQYYAGCLPVPMIDTQVMASFLGYGVSAGFGTLVKD
YLGIELDKGEARTNWLARPLTERQLDYAAADVYYLLPLYQKLMPLVEAKGWQEALAQECA
GLMLKRVKTIDPDKAYLDIKNAWQLNPKQLAILQKAAKWRVLEARKRDLALNFIVKELHL
WKLARYGIKSKAVMAKEGFDNMEIQRHANRLLKMVHDVDDMPEDRYPEKITRLVDLPGYK
QKVKHIKDVVSAVEQETGLMSEFLASKKQINQLISWAWKKDSPSDSLPDMLKTWRKPLFE
SKVLPLLQSK
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccagccgcacgcggttggaaataatatgcctgcaggcgcgccgtcagtcggcc
gtcatgttggataccgagtttgtcagaacccggaccctctacccgaaactgggtttgatc
cagctgtttgacggtgagtccctggcgttgattgacccattggcaattgatgatttggag
ccgctgtgggagctgctgcgtgaccagtcggtgatcaaggtgctgcacgcctgtggtgaa
gacttggaagtattccagtactacgcaggctgcttgccggtaccgatgattgatacccag
gtcatggcttcgttcctcggctatggggtgtctgcaggcttcgggaccttggtgaaagac
tacttgggtattgagcttgataagggggaggcgcgtaccaactggttagcccgtccattg
accgagcgtcagctcgattacgccgcagccgatgtttactatctgctgccgctgtaccag
aaactgatgccgctagtcgaggctaaaggttggcaggaagcattggcgcaggagtgtgcg
ggtctgatgctcaagcgtgttaagactatcgatccggacaaagcttacctcgacatcaag
aatgcgtggcagcttaatcccaagcagctggctattttgcaaaaggcggccaagtggcgg
gtactggaagcgcgtaagcgcgatttggccctgaactttatcgtcaaagagctgcacctg
tggaagttggcccgttacggaattaagtcgaaggcggtgatggcaaaagaaggtttcgat
aacatggaaattcagcgtcatgccaaccggctgctgaaaatggtccatgatgtagatgat
atgcctgaagaccgatacccggaaaaaatcactagactggtggatttgccgggatataag
cagaaagtgaagcatatcaaggatgtggtatcggcagttgagcaggaaaccggtttgatg
tccgaatttttggcgtcgaagaaacagattaaccagctgatctcttgggcctggaaaaaa
gactcgccgtccgacagtctgccagacatgctaaagacctggcgtaaaccgctgtttgaa
agcaaagtgctacctttgctgcagtcgaaataa
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