KEGG   Pseudomyrmex gracilis (graceful twig ant): 109851624
Entry
109851624         CDS       T05003                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
pgc  Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03013  Nucleocytoplasmic transport
pgc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pgc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109851624
  09122 Translation
   03013 Nucleocytoplasmic transport
    109851624
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pgc03019]
    109851624
   03041 Spliceosome [BR:pgc03041]
    109851624
Messenger RNA biogenesis [BR:pgc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     109851624
Spliceosome [BR:pgc03041]
 Complex C
  Other components
   EJC/TREX
    109851624
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    109851624
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st EIF3I WDR55 ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd Beta-prop_Aladin Beta-prop_WDR19_1st WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_HPS5 Tricorn_2nd eIF2A Beta-prop_EML RMC1_N Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_NOL10_N Beta-prop_WDR35_TULP_N PAC11 NBCH_WD40 WDR90_beta-prop_4th DSE1_N Beta-prop_ELP1_1st B-prop_COPA_B_2nd Beta-prop_TEP1_C TRM82_WD PD40 Beta-prop_WDR75_1st Beta-prop_EIPR1 PROPPIN Cytochrom_D1 vWF_A
Other DBs
NCBI-GeneID: 109851624
NCBI-ProteinID: XP_020277463
LinkDB
Position
Unknown
AA seq 322 aa
MAVAASRVDELINYFKSHNKIREQQSHSAKVHSVGWSCDGKYLASGSFDKSVCIFSLCPD
RLKQETTFRGHGGSVDQLCWHAFSPELLSTASGDKTVRIWDTRVQKCTANISTKGENINI
SWSPDGNTIAVGNKEDLVTFIDARVMKIRAEEQFNFEVNEIAWNKDSDTFYLTNGQGCVH
ILSYPELDLLHVIKAHPGTCICIEFDPTGKYFATGSADALVSLWDADELCCLRTFSRLEW
PVRTISFSFDGQLLAAASEDLVIDIGEVQTGEKITDISVEAATFTVAWHPKQYLLAYACD
DKDTYDRKRDAGSLKVFGFAND
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcggttgccgcttcgcgggtagacgagttgataaattatttcaagtcgcacaacaag
atccgcgaacaacagagtcactcggcgaaggtgcacagtgtgggatggagctgcgacggc
aaatacctggcttccggatcattcgacaagtccgtttgcatattctctctatgtcccgat
cgcttgaaacaagaaacaacattcagaggtcacggaggtagtgtggatcaactgtgctgg
cacgctttctctccggagttgctgtccacagcaagcggcgacaagacagtcaggatctgg
gacacgagggtgcagaagtgcacggcgaacatcagcaccaaaggcgagaatatcaatata
tcgtggtctccggatggtaacacaatcgcagttgggaacaaagaggatcttgttaccttt
attgacgctcgtgtgatgaagatacgcgcggaagagcagttcaactttgaggtgaatgag
atagcgtggaacaaggattccgacacgttctatctgacaaacggtcagggttgtgtgcac
atactcagttacccggagctggacttgctgcatgtgatcaaagcgcatccgggaacgtgt
atatgcatagaattcgatccaactgggaaatatttcgcaaccggatcagcggacgcgtta
gtctctttgtgggacgcggacgagttgtgttgtctgaggacgttctcgcgactcgaatgg
ccagtgaggaccatttccttctcgtttgacggtcagttgttggcggccgcctccgaggac
ttggtcattgatatcggtgaggtgcagactggtgaaaaaatcaccgatatttccgtggaa
gcggcaacgttcactgttgcctggcatccgaaacaatatcttcttgcctacgcgtgcgac
gacaaagatacttacgatcgaaaacgagatgcgggtagtctaaaggtgttcggttttgcg
aacgactga

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