Pseudomyrmex gracilis (graceful twig ant): 109852819
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Entry
109852819 CDS
T05003
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pgc03000
]
109852819
Transcription factors [BR:
pgc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109852819
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HVO_2142
NOCA1_C
Motif
Other DBs
NCBI-GeneID:
109852819
NCBI-ProteinID:
XP_020279916
LinkDB
All DBs
Position
Unknown
AA seq
856 aa
AA seq
DB search
MSTLGRLRMSSKRKSPPTKLSEGGGGAGTVAGANEEEEDTTSPVAGSGGEAAVVVGEEGA
ATPVDIEECYSHQRGGECESSGCSSPATTSEPDLRDSPSPLLNSLRTAKRQRLLFLSSQE
TLTPYHHPHHHHHHHHHHHHHHTSSSSGGVVEPTSSSECGSPPTLLSVDSYYPHPHHNNN
NTVTQNNNNNNNNNNNGSGTTAAGSKRSMDDVLKRLTCKMNSESLSIQDDTTNNRRTSPP
LSSTPTGHNAHSGSTTTVANNATLSPPDAGRISNTEAQVQQDGVTALHRVLYADSIVEKE
RRLSEMILQLQLLREQLLQQQEQTKSYPAHMTVDSQKQIEMQRLQTEHLKRQQEHIMQHN
IQELQAQMTKSQLSMSGPQSFMFLPFLEQLRGLPVQSSMPPPPATSTATTGNKHINSIAN
MISSHREGPSWATAHLAQMTTQMEKESSSPAPISSAVAPTAPPLQDLDAPLNLTKPKSTS
SGATASSSSPGSDSHSTGAGSSGQQEQPLAATAPKLFPPGLPIPRNYLPTLPYAGLPPHL
STLSSPMGKVMSKDEAGGPGGSAAAAAVAAVEKHFAMHGLYLPPSAGAMPPSAQTQRPIK
HSSSREETPQEEQDFLSTPHMWRDPAYKVAEDITEKAKMVRQQKREGENKPHIKRPMNAF
MVWAKDERRKILKACPDMHNSNISKILGARWKAMSNSEKQPYYEEQSRLSKLHMEKHPDY
RYRPRPKRTCIVDGKKMRISEYKSLMRQRRQEMRQLWCRDGGTEMNFLSPVGADLTGTQH
HSSTGAGPSARPSVSPPATMLNGGSGGGGTAGPSSDHPSFYYPQDSLSPTDMMNFSPENS
GSIGGYDASPRHHDED
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgcttggcagactgaggatgtcctcaaagaggaagtcgccaccaacgaagcta
tcggagggcgggggcggtgcgggtacagtggcaggcgccaacgaggaggaggaagacacg
acctcgccggtggccggttccggtggcgaggcagcggtcgttgtcggtgaggagggtgca
gccacccccgtcgacatcgaggagtgctactcccatcagagaggcggcgagtgcgagtcg
tccggctgttcgtcgccggcgacgaccagcgagccggatctacgtgactcgccatcgccc
ttgttaaattctctgcggacggccaaacggcaaaggctgctgttcctatcgagccaagag
actctcacgccctatcatcatccccatcatcatcaccatcaccaccatcaccaccatcat
caccacacgtcgtcgtcatcgggtggtgtagtggaaccgacgagctcatcggagtgcggc
tcgccgcccaccctcctctccgtcgactcctactatcctcatccccatcacaacaacaac
aataccgtaacgcaaaataacaacaacaacaataacaataataacaacggcagtggtacc
accgccgcgggcagcaaaaggtctatggacgacgttctcaaaaggctaacgtgcaagatg
aacagcgagtctctgtctattcaagacgacaccaccaacaacaggcggacgtcaccgccg
ctttcatccacaccaaccggccataatgcacatagcggaagcacgaccaccgtggcgaat
aacgcgactctttcacctccggatgccggaagaatatcaaacacggaggcacaggtacag
caggacggcgtgacggcccttcacagggtcttgtacgccgacagcatcgtcgagaaggag
cgccgactgtcggaaatgattctgcagctgcaactgctcagggagcaattgctgcaacag
caggagcagacgaagtcgtatcccgctcacatgacggtcgactcgcagaagcaaatcgag
atgcagcggctgcaaacggagcacttgaagcggcagcaagagcacatcatgcagcacaac
atccaggagttgcaggctcagatgacaaagagccagctgagcatgtcggggccgcagtcg
tttatgttcctgccgtttctcgagcagctcagagggttgcccgtacaatcgtccatgccg
ccgccaccggccacgtcgaccgccacaaccggcaacaagcacatcaactccatcgccaat
atgatcagcagtcatcgggaaggcccgagctgggcgaccgcgcatctcgcgcagatgacc
acgcaaatggagaaggaatcgtcgtcaccggcaccgatctcctccgccgtagccccgacg
gccccgccgcttcaggatctcgacgcgccgttgaacctaaccaagccgaagtcgacgtcc
tcgggtgcaacagcgtcatcctcgtcgcccggtagcgattctcactcgaccggcgccgga
agtagcggtcagcaggagcaaccgctcgcggcgaccgcgcccaagcttttcccgccagga
ctgccgataccgcggaattatctgccgacgcttccttacgcgggcttgccgccgcatctc
agtaccctatcttctccgatgggcaaggtaatgtccaaggacgaggccggtggaccgggc
ggatccgcggcggccgctgcggtcgccgccgtggaaaagcactttgcgatgcacgggctc
tacttgccgccgagcgcgggtgcgatgccaccgtcggcccaaactcaaaggccgatcaaa
cattcgagctctcgggaagaaacgccacaggaagagcaagactttctctcgacgcctcac
atgtggcgagatccggcgtataaagtagcggaagacataacggaaaaagctaaaatggtg
aggcagcagaaacgggagggtgagaacaagccacatatcaaacgacctatgaacgcgttc
atggtttgggccaaagatgagcgcaggaagatcttgaaagcctgtccggatatgcacaat
tccaacatatcgaaaattctcggcgcccggtggaaggcgatgtcgaactcggagaaacaa
ccgtactacgaggaacaatcgcggctgtcgaaactgcacatggagaaacatccggactat
aggtaccgaccgcgaccgaaacgcacgtgtatcgtggacggcaagaagatgcgcatctcc
gaatacaaatcgctgatgcgacagcggcgacaagagatgcggcagctgtggtgccgggac
ggcggcaccgagatgaactttctgtcgccagtcggggccgatctcaccggcacgcagcat
cattcgagtacgggtgctggcccgtcggcgcgtccgtcggtctcgccgccggcgacgatg
ttgaacggcggcagcggcggcggtggcaccgccggcccgagctcggaccatccgtcgttc
tattatccgcaggacagtctctcgcccacggacatgatgaacttctcgcccgagaattcc
ggctcgatcggtggatacgacgcgagtccgcggcatcacgacgaggattga
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