Pseudomyrmex gracilis (graceful twig ant): 109853274
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Entry
109853274 CDS
T05003
Name
(RefSeq) uncharacterized protein LOC109853274 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109853274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgc03021
]
109853274
03019 Messenger RNA biogenesis [BR:
pgc03019
]
109853274
Transcription machinery [BR:
pgc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109853274
Messenger RNA biogenesis [BR:
pgc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109853274
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
109853274
NCBI-ProteinID:
XP_020280792
LinkDB
All DBs
Position
Unknown
AA seq
1907 aa
AA seq
DB search
MTSTKSKEVAEEYISSLSDLTINSKPLINMLTMLAEDNIEHAPAIVQAVENHLQKVRSDI
KLPVLYLIDSIVKNVNGDYLNLFTQNIVNTFCGVFEKVDENTRACMWKLRQTWNDVFPPK
KLFSLDVRVQSIDPAWPITAPPTTMSSGSIHVNPRFLSMPQQTATSIVSPVKLPPGEPVT
TTEAVMREQLLKKQRELLELQKKKIELELLQAKASLEQQQRQLDKQAGNLKTEIVTSTAH
VPPTTEAATSGKTVASTVPNQTPIDVTKQFPAATASLLKNARASGGPRISPVSMMQIARD
NKINATPRDPRLKLNPVVQDVVTPTATVDPRQRSSITSPKESRSEGQTQPVANTIVTSNQ
LKQQFISKPAVTSTVNKPPAVPAGSDNSTLLNVINNNHANTNLNNNNNNKNFSDNTNKDA
VLHRTSQKKDPRLTSNSSNLNSNSSKNSQNLSASNSSSSALSASNRGSGSGDSSSKSKDS
KSSISRGSSSSSSTSEKSSTSSKSSHRKLGNKSRSKHPQMCPNKIPKIDRDSSPVRSKSR
EKDSGDSSPSSRTSPKSFQASSKNRKKNMKSRKRSPSPPYRIPRRNDTKSGSSSLNSSGG
VTEEEQSGSLIVSPPHPPAFKEIRPNARQRNYVRRNKDDSLSPEHSPASSAGNAQIAAEP
TLESSSKDEDLRAPLSLPTTAVSVSEKKEDLDLRVLPSVNTNKRRSEEHIEVTPSKKSKA
EKFDALFGNEDVDLRTLTHPKAGRPPTPPPPVISGEDGKDGWAKLKTPTKNDREKQVNNT
DDKRDRDRNRDRLGRLRLYNKLPDDPKERRRTLSNEDQDGRPGRRGRENDKSERNDDRNI
EIIMKQAAEQLNQGSITKSQYNTLIQEVLHMSEDRKLRAAQRKEKEGGTVIWEKSINMDV
DRAATFSPSSEKDILRNKDHPITRNPNGPRWQNQPWQQPWAHPPGPYGGPQGHYNADLRP
VAPWQNPRHFGPMRPDYQYHGGFNHNLGPNARLGPSMMGPLGPNGPIMSNLLPNGPLGPI
GPLSNSPMTMGCHPAMIMNNGPMTNLLPTPNIPPLTSSRNVSPNTSAKYDHEDNDQNYSV
VKNTVAHNRELPPPDSKLLTEIARDTMKSINIDNIPREIRYYGQTGVVFMNWDDPREIGF
QDGIRRILIDEKDTITCAFNDQYKEFMYEGEVHRIKLGAPTRELYVDDCWYECYFGGMPI
TIELGGKKISVKLEGPPPQVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQVFEIEG
KPHTLEFTDALQTVLLNGRPFKVEFGGLPKPIIVREKKHFIRFSVLPRGVRAGHVKISGM
KGEGPIESPPPSTSLLSQKPKVEAAPVPSQLPALEQESTSQDGSEFPSASKPDLQLDILS
SVLPSAMAPSSGLSYQAEPVENPSASVTTLNMNELFQRLVETGIVPNITEQKKQEEEEKK
KPEITPVSFDKPETLKIKQPAISAALYSGMQCSSCGARFAPELATRYSHHLDWHFRQNRR
ERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRAQSWFETEKQTAETEGVAADELPQETQQ
PSVPTGSDEDSRCQVCHDAFEQFYNEEKEEWHLRPAVLYEEKNYHPLCLEDYKEKSLVRA
LEKSALALEETILEGEEGKTEETPEDESKQEETTSKVESNTEAPGDETKQEPDVEISTTE
VEFSAENAEQADHSETGVLDDKEKTSTENSEDKSAQNVAEEKTRTENENSEEDTVTESGE
NENASAKVEESPGEAIMPFENIKIKEEPLDIDEDANQDSEMFLCENIHIKEEPVEEPIEP
NPEEITVDTTYTAVKSSIDGNVELESTPAPIVAAPSRIKINITKPLSSNKEPEDTKEKEK
VETPPVEENVEQPLVAVSIKPSLQGRKLSNLPPVEKGQELSGLCSIM
NT seq
5724 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgacaaagtcaaaagaagtggcagaggagtatatctcctccctgtcagatctt
acaatcaacagtaagccgcttattaacatgctcacaatgctggcagaagataacattgaa
catgcaccagcgatagtgcaggctgttgagaatcatctacaaaaggtgagaagtgacatt
aagttgccagtactctatctcatcgattcaattgtcaaaaatgtgaacggagactatttg
aatctcttcacacaaaacatagtgaacacgttctgcggagtgtttgagaaggtcgatgag
aatacaagagcctgtatgtggaaattgcggcaaacgtggaatgatgtatttccaccaaaa
aagttgttttcattagacgtgcgggtccaaagtatcgaccctgcatggccaatcactgcc
cctcctaccactatgtcttctggatctatacatgttaatccacgatttttatcgatgcct
caacaaaccgcaacgtcgatcgtgtcgcctgttaaattgccacccggggaaccggtgacc
acaacagaggcagttatgcgagagcagctattgaagaagcaacgggagttgctagaactg
caaaagaagaaaattgaactagaattattacaagctaaagccagcttagaacaacagcag
agacaacttgacaaacaagccggaaatttaaagacagaaatagttacatccaccgcacat
gttccaccgactacggaggcagcaacgtcaggaaaaactgtagcatccacagtgccaaat
caaacgccgatagacgtaacaaaacaatttcctgcagccacagcgtcgctcttgaagaac
gcaagagccagtggcggtccacgaatttcaccggtcagtatgatgcaaatagcgagggat
aataagatcaatgctactccacgagatccacgtttgaagctgaatcctgttgttcaggat
gttgtaacgcctacggcaacagtagacccacgtcaacggtcgagtataacaagcccaaaa
gaatcgcgaagtgaaggccaaacgcagccagtcgcaaatacaattgtaacttcaaaccaa
ttaaagcagcaatttatctcgaaaccggctgtaactagcactgtcaacaagcctccggca
gttcctgccggttctgataattcaacgttattaaacgttattaataacaatcatgctaat
acgaacctcaacaacaataataataataaaaatttcagtgataacacaaataaagatgct
gtcttgcatcgaacgagtcaaaagaaagaccctcgattgactagtaatagtagtaaccta
aacagtaacagctccaagaacagtcagaatttatcggctagtaatagctcatcttcagct
ttgtcagcgagcaatcggggaagtggaagcggtgattcaagcagcaagtccaaagattcg
aagagctcgatctcacgcggctcttcctcgtcttcttcgacatctgaaaaatcttccact
tcctccaaatcctcgcataggaaactagggaataagtcgcggtctaaacaccctcagatg
tgtccgaataaaataccgaaaatcgacagagactcgagtccggttaggtcgaaatctcgc
gagaaagacagcggagacagttcaccgtcctcacgtacctctccaaaatccttccaagcc
tcttctaaaaatcgcaagaaaaatatgaaatcgagaaagcgtagtccgagtcctccgtac
agaatccccaggcgaaatgatacaaaatcgggctcttcaagcttaaacagttctggcggt
gttactgaggaggagcaatctggttcgctgatagtatctcctcctcatccacctgcattc
aaagagattcgaccaaacgctaggcagagaaattatgtaaggcgtaataaagatgacagt
cttagtccggaacattctccagcctccagtgctggaaatgctcaaatcgctgctgaacca
acattggaatcctctagtaaagacgaagatctcagggcgccgctatctctacctaccact
gctgtgtctgtatctgaaaagaaagaggatttagatctacgagtattaccgtctgttaat
actaataaaagacgcagtgaagaacatatagaagtaacaccatctaagaaatctaaggct
gagaaattcgatgcattatttggtaacgaagacgtagatttgcgcactctgacacatcct
aaggcaggtcgaccgccgacacctccgccgcccgtaatttccggcgaggacggaaaggac
ggctgggcgaaattgaaaacgcccacaaagaacgacagagaaaagcaagtcaacaacacc
gacgataaacgtgacagagatcgcaacagggaccgacttggtcgtctcagactgtacaat
aagctgccggacgatcctaaagagagaagaagaacgttgtcgaacgaagatcaggacggc
aggcctgggcgcagaggcagagagaacgacaagtccgagagaaatgacgacagaaacatc
gagataataatgaaacaagccgccgagcagttgaatcagggatcaatcacgaagtcacag
tacaacaccttgatccaggaggtgttgcacatgagcgaagatcgaaaattgcgcgcggcg
cagcgtaaggagaaggaaggcggtactgtaatatgggagaagagcatcaacatggatgtg
gatcgcgccgcgacgttcagtccatccagcgaaaaggatatcttgcgaaacaaggatcat
ccgataacgcgaaatccgaacggtccaagatggcagaatcagccgtggcagcagccgtgg
gcacatccgccggggccgtacggcggacctcaaggacattacaacgcagatttgcgaccg
gtcgctccctggcagaatccgagacattttggtccaatgagaccggattatcagtatcac
ggtggtttcaatcacaatctaggtcccaatgcgcgtttaggacccagtatgatgggtccg
ctgggtcccaacggcccgatcatgtcgaatcttttgccgaacggcccgctaggaccgatc
ggtcccctgtcgaactctcctatgacaatgggatgccatcccgcgatgataatgaacaac
ggaccgatgacgaatcttctgccaactccgaatataccgccattaacgtccagcagaaac
gtgtcgccaaatacgtccgccaaatacgatcacgaagacaacgatcaaaattactccgtg
gtgaagaacacggtcgcgcacaatcgggaattaccgccgcccgattcgaagttactgacg
gagatcgcacgtgacaccatgaaatcgataaacatagacaacataccgcgtgagattcga
tactacggacagacgggtgtggttttcatgaactgggacgatccgcgcgagatcggcttc
caagacggcatcagaagaatattgatcgacgagaaggacactataacttgtgcgtttaac
gatcagtacaaggagttcatgtacgagggagaggtgcacaggatcaaactcggtgcgccc
actcgagaattatacgtcgacgactgctggtacgagtgttacttcggcggtatgccaata
acaatcgaactcggcgggaagaagatcagtgtaaaactggagggtccgccgccgcaagtc
aagatcggcactgtgaagagaacggatctcgtcgtcgcgaaaatcaatctcattatcaac
gctcgaaatatggtgcccgtatttttggacgcaaagccgcaagttttcgaaattgaagga
aaacctcacacgttggagttcacggatgccctgcaaacggttcttctcaacggacgaccg
ttcaaagttgaattcggcggattaccaaagcccattattgtcagagagaagaagcatttc
attaggttctcggtcttaccgagaggtgtgcgcgctggtcacgttaaaattagcggaatg
aaaggcgaaggacccatcgagtcaccaccgccatcgacgtctctgctatctcaaaaaccg
aaagtggaagctgcgccggtgccaagccaattgccagctttggaacaagaatccacgtcg
caagatggctcggaattcccttctgcgtcgaagccagacttgcaattggacatattgtct
tctgttttgccatcggctatggcgccttcatccggtttgtcgtatcaagccgaacctgta
gaaaatccgtctgcgtcagtaacgacactgaatatgaacgagctgttccaaaggctagtc
gaaactggtattgttcctaatattacggaacaaaagaaacaggaagaagaagagaagaaa
aagcccgagatcaccccggtctctttcgacaagccagaaacccttaaaatcaaacagccg
gctatctccgcggcgttgtacagcggtatgcaatgcagttcttgcggtgccagattcgcg
cccgaactggctactcggtacagccatcacttagattggcacttcaggcagaacagacgc
gagcgagattccgcgagaaaggctcattctcgaccgtggtattatgacgtcagcgattgg
atacagttcgaggagatcgaagatttggaagacagagcgcaaagttggttcgaaacggaa
aagcaaacggcggaaacggaaggtgtggctgctgacgaattgcctcaggagacgcagcag
cctagcgtcccgaccggcagtgacgaagattcgcgctgccaagtgtgtcacgatgcgttc
gagcaattttacaacgaggaaaaggaggaatggcatctgagaccggcggttctttacgag
gaaaagaattatcatccgctctgtttggaagattacaaggaaaaaagtttagtgagagcg
ttagaaaagtcagcgttggcgcttgaggagactattttagaaggtgaggagggtaagacg
gaagaaacacccgaagacgagtctaaacaagaagaaacaacgtctaaagtcgaatctaac
acagaagcgcccggagatgaaaccaaacaagaaccggacgtagaaatatcgaccacagaa
gtcgagttctccgcggagaacgcggaacaagcagatcactcagaaactggcgtgttagat
gacaaagagaagactagtaccgagaattccgaagacaagagcgcgcaaaacgttgcggaa
gagaaaacgaggacggagaatgagaacagtgaggaagatacagttacggaaagtggcgag
aatgagaacgcgtctgcgaaagttgaagagtctccgggcgaagcaatcatgccgttcgaa
aatatcaagattaaggaggaaccgcttgatatcgacgaagacgccaatcaagattcggaa
atgtttttgtgtgaaaacattcatatcaaagaggaacctgtagaagaacctatagaacca
aatcccgaggaaatcacagtcgacacgacatacactgcagtgaaaagttccatagatggt
aacgtggaattggaatcgacaccggctcccatcgtcgcggcaccgtcgcgaattaagatc
aacatcacaaagcccctgagttctaacaaagagccggaggacactaaagagaaggaaaaa
gtggaaacgcctccggtagaggagaacgtggaacagccgttagtagcagtgtccattaaa
ccgagtttacagggtaggaaattgtcgaacttacctcccgtggagaagggacaagaattg
tccggactttgctctattatgtaa
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integrated database retrieval system
