Pseudomyrmex gracilis (graceful twig ant): 109853450
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Entry
109853450 CDS
T05003
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc04140
Autophagy - animal
pgc04142
Lysosome biogenesis
pgc04145
Phagocytosis
pgc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
109853450
04142 Lysosome biogenesis
109853450
04140 Autophagy - animal
109853450
04148 Efferocytosis
109853450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pgc04131
]
109853450
Membrane trafficking [BR:
pgc04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
109853450
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
VPS18_solenoid_2nd
Clathrin
TPR_Vps41
Beta-prop_RIG_2nd
CGI-121
Zn-C2H2_12
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
109853450
NCBI-ProteinID:
XP_020281186
LinkDB
All DBs
Position
Unknown
AA seq
879 aa
AA seq
DB search
MHDAYEETSILNITVQIESMAAYDDNLLIGTREGHLLMYNVPSVFDDSHKLELLRHSKNF
NKKRINQIDVVPEYNLLIILTDNIVCIHDLNSPNFQQISQLSKTRGATLFTMDVQSTESL
TGEKNTVVRLCVAVKRKLQLYYWKGKKFEEFKDFELTVPDIPRHLSWCGETLILGFRGLS
YTIFDLNGKTKELFPTGKSPEPSITKLSDNSFVLGKDSQSFIMDTKGELVQHNPVKWSDT
PNAITWDEPYLLGIVHDRLEVYTLEGCLHIQTIKDLNKARLIYRCKQGKVFVASISQIWC
VKAVDVTLQIRTLLEQNQFQLALKLTNLSDITDEEKVKQTYKIQTLYAHHLFYNKRFQEA
MDLFLQLGTDPYEVIRLFPDLVTPSANANELSEPTPSLPKLQDHDLEKGLRALIVFLTEV
RHKLMAKDKELAKEKNEINGEKNLTAVATEQLLKIIDTTLLKCYLQTTDALVAPLLRLNH
CHLAEAEKTLLMHQKYPELIILYQTKGQHKKALELLEKHAKENDSSLKGTERTIQYLQHL
GKDHMDLILKFAGWVLTEDPEQGLRIFMEDIQEVEHLPRPKILDYLLRFHKDLVIQYLEH
VVHVWEDTNPLFHNVLIHQYKEKCLASMNQNATPAEKETSQHIRQKLQQFLEKSPYYTPE
TILVHFPFDSLFEERAIILGRLGRHQQAISIYVSLLNDIPRAIQYCQNVYTRYQNQDRAE
KQKQTDNADEVYVLLIQQLLKPDNEGVLMAGCSPEIQRTTQPDLEMALRLLEEHASKINP
MKALEVLPDSVPIGRIKHFLEVSLQNNLNARRRTQVLKGLLYAEHLQVQEQRMHYESQNV
LMTEFNICPVCKKRFGNQSAFARYPNGDIVHYSCQDRKS
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcttacgaggaaacgtctatattaaatattactgtacaaatcgaatctatg
gccgcttacgatgacaatctattgataggcacgcgagagggtcatcttcttatgtataat
gtcccgtcggtgtttgatgacagccacaaactggaattattgcgacatagcaaaaatttt
aacaagaaacgtatcaatcagatagatgttgtgccggaatataatttattgatcatctta
acagataatattgtatgtattcacgatttgaattcgccaaactttcaacaaataagccag
ttatcaaagactcgcggtgccactctgtttactatggatgttcagtcaactgagagtctg
accggagagaagaacaccgtagtgcgactgtgcgttgccgttaagcgtaaattgcagttg
tattattggaaggggaagaagtttgaggaattcaaagattttgagttaaccgtgcctgat
atacctcgtcatttgtcatggtgtggtgaaacattaatattgggttttcgcggattgtct
tatacaatttttgatctgaacggtaagaccaaggaactctttcccactggcaagtctccg
gaaccaagtatcacgaaattatcagacaattcttttgtattgggaaaggattctcagtca
tttatcatggatacaaaaggagaactggtgcaacacaatcccgtaaagtggtctgacaca
cctaatgcaataacgtgggatgaaccttatttacttggtattgtgcacgacagattggag
gtgtacactctcgagggatgtctgcatattcagacaataaaggatctaaataaggccagg
cttatatatcgatgtaaacaagggaaggtctttgtggcatccattagtcagatatggtgt
gtcaaagcggttgatgtaactttgcagattagaactctactggaacaaaatcaatttcag
ttggcgttaaaattaaccaatttgtcggatataacggacgaggagaaggtcaaacaaacg
tacaaaatacaaacgttgtacgcgcaccatttgttttacaacaaacgattccaagaagca
atggatctgttcttgcaactaggaactgatccgtacgaggtgatcagattgtttccggat
ttggtcacaccgtcggccaatgccaacgagctcagcgaaccaacgcccagtctgccgaaa
ctgcaagatcatgatttggagaaaggtttacgcgcgctgatagtttttctgaccgaagtt
agacataaattaatggcgaaagacaaagagcttgctaaagagaagaacgaaataaatgga
gaaaagaatttgactgcggtagctacggaacagcttctgaagattatagacaccacactc
ttaaaatgctatctgcagaccaccgatgctttggtagcacctttactcagactgaatcac
tgtcacttggcagaggctgagaaaactttgctaatgcatcagaagtatccggaacttatt
atactttatcaaaccaaagggcaacacaagaaagcgctggaactactcgagaagcacgcg
aaagaaaacgattctagtctgaaaggcaccgaaagaacaatacagtatttgcaacatctc
ggcaaggatcacatggatttgattctgaagtttgctggatgggttttaacggaggatcct
gaacaaggcttgagaatatttatggaagatatacaggaagttgaacatttgcccagacca
aagatattggattaccttcttcgttttcacaaagacttggtgatacagtacctggaacac
gtggtacacgtttgggaagacaccaatccgttattccacaatgtgttgatacatcagtac
aaggaaaaatgtctggcctccatgaatcaaaacgcaacgccggcggaaaaggaaacctcg
caacacattcggcagaagttgcaacagtttttggagaaatcgccgtattacacgccagaa
acgatattggtgcacttcccgttcgacagtttattcgaggagcgtgcgattatacttggc
cgactcggtcgtcatcagcaagctatatcgatatacgtcagtcttctgaacgatataccg
cgtgcaatacaatattgtcaaaatgtatatactagatatcaaaatcaagatcgcgcggag
aaacaaaaacaaacggacaatgcggacgaggtttacgttttgctgattcagcaattgttg
aaacctgacaacgagggggttttaatggccggttgtagtccggagatacaaagaacgaca
caaccggatttggagatggctctgcgattgttggaggaacacgcttcgaagataaacccc
atgaaggcgttggaggttttgccagattccgttcccataggtagaataaaacactttctg
gaagttagtttgcaaaacaatctgaacgcgagacggagaacgcaggttctcaagggattg
ctttacgcggaacatttgcaagtgcaggaacagcgaatgcattacgagtctcagaacgtt
ctcatgacggagttcaacatatgtccggtttgtaagaagcgattcggaaatcaaagcgct
tttgcgagatatcccaatggcgatatagtgcattattcgtgtcaagatcgcaagagctaa
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integrated database retrieval system
