Pseudomyrmex gracilis (graceful twig ant): 109853639
Help
Entry
109853639 CDS
T05003
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109853639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgc03019
]
109853639
Enzymes [BR:
pgc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109853639
Messenger RNA biogenesis [BR:
pgc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109853639
mRNA degradation factors
3'-5' decay
Pan complex
109853639
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
zf-CCCH_2
DNA_pol_A_exo1
DUF7563
Motif
Other DBs
NCBI-GeneID:
109853639
NCBI-ProteinID:
XP_020281532
LinkDB
All DBs
Position
Unknown
AA seq
1357 aa
AA seq
DB search
MDYSVMGHYGPAVEATDHASGEEERDLLCECVVCVSRSISWHQLFLRYSKNSTVIEQLFV
VAYSAKLTGEEGNYVVPGDEYVPATEQFGEDFAGAEFHETRTLLADGGDRFGVSTATFDT
VEELMWMGNQGGHVTSYYGSSLQKYTSFQVHATQEIRHIHPMDEGILVLSQSQLRFQLRR
GIPIFTHTSVNMQDMQCMLQISPTRLLLGGHQDKIIDFNLTRGKESGLVDVGEHGCAILR
QHSRLICAGNPMGRIDLRDPTTLSVEHTLDTHSASLSDFDVQGNYLVTCGFSNSHQGLTV
DRFLMVYDLRQMRALNPVTIMVYPLLLKFLPSYSSRLAVVSPLGQMQLLDTIYANVQPSM
TCLYQVATGVAGILSFDVASTSQCLCFGDSAGFIHLMSTNNPEPQFNTLSRPTEFADLVP
TVQSIPFDDDVTPLSTIPMIYSDQPLLSDWPEEFLKKVYRKTPLIDPEILRTMKMQGTIG
YAPNPQAFRRNQIPYNLEKRRGLVTKLFAGDTRSKTDDGTFVAIPKRYRKIELKYSRLGY
DDFDFDQYNRTSFCGLEATLPNSYCNAMLQLLYYCEPVRIALLSHSCQREFCLSCELGFL
FHMLDTSRGLPCQAANFLRAFRTVPEASALGLILNDLHPEAKKKISLIRLIQSWNRFILH
QIHYEILETRKRQQEEEEARLRSGCRYPPFVYNEQDFPSILEDLGSRYRHHEEERKKKRK
QEEDGKYMWITSKDKNTKKSAEESEVRDDETEISRLFGSEQMHIHRCLKCGQEATKHSIM
LLCNLVYPEIVNPSEEVPFTSVLARSLRPEKITPAWCDNCQKFTPTLQSRQLTKLPQILA
LNCGLDTQQDKAFWQNQMDIVVQNVLTGKESSPNSSPVPVTAKPCRYGNNCTRVGCRFRH
LGRELETEKLLTSSSVPSTSSSVPVTSPPSHLYYSHSWIPHNIEISLRENGEISVKKINE
FKNDSNSDSTQTNVMQNGQADNKVQIIPETIENDLAKEIENCNIVSNNEDGETKSTNPEI
AKKQTIQYGLSAVVCYVDDKNNEDRRNIVALLRVGPSYHERSGHAVSQWYIFNDFCISPV
TPQEAVWFNLDWKVPCVLHYTSIPAPKPATFISPLTYDVFGEDKCIARNGGTIGITFTPL
SSDEMPKKGELVGIDAEFVTLNQEEAELRSDGKMSTIKPSHMSVARITCIRGQGPLEGTP
FIDDYISTQEQVVDYLTKFSGIQPGDLDATLSSKHLTTLKSTYQKLRFLVDNGIIFVGHG
LRNDFRVINLVVPPEQIVDTVLLFHLPHHRMVSLRFLTWHFLGKTIQSETHDSTEDARAA
LELYRKYKELENSGTLTETLKELYEVGTQLQWKVPDS
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggactactcggtgatgggccactatggtcccgccgtagaggccacggatcacgctagt
ggtgaggaggagcgggatttgttatgtgagtgcgttgtttgcgtatcgcgatctatcagc
tggcatcagctgtttcttcgatattcgaagaattcgactgtcatcgagcagttgtttgtt
gttgcttactcggcaaaactcacaggggaagagggtaattatgttgtacctggggatgaa
tatgtacctgctacggaacagtttggagaagattttgcaggagctgagtttcatgagact
agaacgttactcgccgatggcggagataggtttggagttagcactgccaccttcgataca
gttgaggaacttatgtggatgggaaatcaagggggtcatgtaacatcttactacgggtct
agtttgcaaaagtatacctcttttcaagttcatgcgacacaagagataagacatattcat
cctatggatgagggaattctggttttaagccaaagtcagctgagatttcaattgcgtcgc
ggcatacctatatttacacacacgtcagtaaatatgcaggacatgcagtgcatgttacaa
atttctccaaccagattgcttctaggtggacatcaggacaaaatcattgattttaatctt
actagaggaaaagagagtggattagtagatgttggagaacatggatgcgcaatattgaga
caacacagtagacttatctgtgctggtaatcctatgggaagaatagatctcagggatcca
actacattgtcagtagaacatactttggacacacatagtgcttccttaagtgattttgat
gttcagggaaactatcttgttacatgtgggttcagcaacagtcatcaaggccttactgtc
gatcgatttttgatggtctatgatctgagacaaatgagagcattaaatccagttaccatt
atggtgtatcctcttttattgaagttcctaccaagttattccagtcgtctcgcagtggta
tcaccgctcgggcaaatgcagctgcttgatacaatatatgctaatgtacaaccatcaatg
acatgtttgtatcaggttgcaactggagtcgctggcatactatcctttgatgtagcttca
acatctcaatgtctttgtttcggagactcagcaggttttatacacctaatgtctaccaac
aatccggaacctcaatttaatacattatctagacctacggagtttgccgatctagttcca
accgtacaatcgattccttttgatgatgatgttacaccattaagtacaataccaatgata
tattctgatcaaccacttctgagtgattggccagaagaatttttgaaaaaagtttatagg
aaaacaccactaatagatcccgaaattttgcgtacaatgaagatgcagggaacaatagga
tacgcgccaaatcctcaggcttttcgcagaaatcaaataccgtacaatttggaaaaacgg
cgtggcttagtcacgaagcttttcgcgggggacacacgatctaaaaccgatgacggcacc
tttgtggccatacccaaacgttatcgtaaaatcgagctgaagtattcacggctcggttac
gacgattttgatttcgatcagtacaatcgaaccagcttttgcggtctggaggccacacta
ccaaacagttattgcaatgctatgctgcagttgctatactactgcgagcctgtaaggata
gcattgctctcgcattcgtgccaacgagaattctgtctttcttgcgaattgggattctta
tttcacatgctagacacgtcacgaggattaccctgccaagccgcgaattttctcagggct
tttagaactgtaccggaagcatcggctttgggactcatactgaacgatttacatccggaa
gccaagaaaaaaatcagtttgattagactcatacaaagttggaatagatttatattacat
cagatacactacgagatcctggaaactcggaagcggcagcaagaagaagaggaagcacga
ctcagatcgggttgcagatatccgccatttgtttataacgaacaggattttcctagtatc
cttgaggatctcggttctcgatacaggcatcatgaggaagagaggaaaaaaaagaggaag
caagaggaggatggtaaatatatgtggatcacatcgaaagacaagaacaccaaaaaatcc
gccgaagagagtgaggtacgagacgacgaaactgagatcagtcgcctatttggatctgaa
caaatgcacatacatcgctgtctcaaatgtgggcaagaagctacgaaacattccattatg
ttactctgtaacttagtttatccggaaatagttaatccttctgaagaggtaccgttcaca
agtgttcttgcccgcagtttaagaccagagaaaattacacccgcatggtgtgacaattgc
cagaaatttacacctactctccagtctcgacaattgactaaactacctcaaatactggct
ctaaactgcggcttagatactcagcaggataaggcgttttggcaaaatcaaatggacata
gtagtacaaaacgtgttgacgggtaaggagagtagtcccaactccagtcctgtgcctgtt
accgcgaaaccatgtcgatacggcaataattgcacccgagttggatgtcgattcagacac
cttggtcgcgaattagaaacagaaaaactattgacatcgtcctctgtcccgtctacctcg
tcatcggtgcccgttacatcaccccctagtcacttatattattcgcactcctggatacct
cacaatatagagatctctctacgagagaacggagaaatatcggtgaaaaaaattaacgaa
ttcaaaaatgattcgaatagcgattcgacacaaacaaacgtgatgcagaacggccaagct
gacaataaggtacaaataattcccgagactatcgaaaacgatctggcaaaagagattgaa
aattgtaatatagtatcgaataacgaggatggtgagacaaaaagtacaaatccagagatt
gcgaaaaaacaaacaattcaatacggtctcagtgccgttgtctgttacgtagacgataag
aacaatgaagatcgaagaaatattgtggcgttgttgcgagttggaccaagttatcacgaa
cgctcaggacacgctgtgtcacagtggtacattttcaatgacttctgtatatcaccggtg
acaccgcaggaagcggtgtggtttaatctagattggaaagttccgtgtgtacttcattac
acatcaatacccgcgcctaaacccgcgacgtttatcagccctcttacatacgatgttttc
ggagaagataagtgtattgctcgcaatggtggaaccataggcattacctttactcctttg
tcatctgatgaaatgccaaagaaaggcgaattggtggggattgatgcggaattcgttact
cttaatcaagaggaggccgaattgcggagtgacggaaaaatgtcaactataaagccgagc
catatgtcagtcgcacgaatcacttgcatacgcggacaaggtccgctggaaggtacacca
tttatagacgattacataagtactcaagaacaagtggtagattatctaacaaaattcagt
ggaatacaacctggtgatttagatgcaactttgagcagcaaacatcttactactctaaaa
tcgacgtatcaaaagttaagattcctagtggacaatggcataatttttgtcggtcacggc
ttgagaaacgattttagggtaataaatttagtagtgccgccagagcaaatagtggataca
gttttgttatttcatttacctcatcatcgtatggtgtcgctacgcttcttaacttggcac
tttttgggtaaaacaatccagtctgaaactcacgattcaactgaggacgcgcgagcggcc
ttggaattgtatcgtaaatacaaggaactggaaaactctggcacgttaaccgaaaccctt
aaggaactttacgaagtcggtacccaattacagtggaaagtgcccgatagctga
DBGET
integrated database retrieval system
