Pseudomyrmex gracilis (graceful twig ant): 109853771
Help
Entry
109853771 CDS
T05003
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109853771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgc03019
]
109853771
03041 Spliceosome [BR:
pgc03041
]
109853771
03009 Ribosome biogenesis [BR:
pgc03009
]
109853771
03016 Transfer RNA biogenesis [BR:
pgc03016
]
109853771
Enzymes [BR:
pgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109853771
Messenger RNA biogenesis [BR:
pgc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109853771
Spliceosome [BR:
pgc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109853771
Complex C
U4/U6.U5 tri-SnRNP related factors
109853771
Ribosome biogenesis [BR:
pgc03009
]
Eukaryotic type
Pre-60S particles
Helicases
109853771
Transfer RNA biogenesis [BR:
pgc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109853771
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
ATPase_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
109853771
NCBI-ProteinID:
XP_020281762
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MANFSEDLFDVFDEQGDDIEIPEAKKVETDVGTKRQCDKQDDDISGVKKFRQDPILDDIN
LEEVACRITVHTVDTIRSCTHEVAIPPDQEYISLEHKQGKPAKEYKFILDPFQKEAILCI
ENNQSVLVSAHTSAGKTVVAEYAIAMSLKEKQRVIYTTPIKALSNQKYREFYEEFRDVGL
VTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEETLI
LLPDNVHYVFLSATIPNARQFAEWVTHLHNQPCHVVSTDYRPTPLQHYIFPVGGDGIHLV
VDENGQFKEDNFNRAMACLQNTGDAAKGDTKGRKGGIRATNSGHTNIFKMIKMIMERNFA
PVIIFSFSKKDCELYAMQLAKLDLNTMEEKKLVDEVFNNAVDVLNDEDKKLPQVTNLLPL
LRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGK
DFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVNPAVGKAIVQGKPDPINSAFHLTY
NMVLNLLRVEEINPEYMLERSFFQFQNQASIPALYNKVKELCDAYNVVTVERYDEISSYH
DIREQLNRLTEQFRSFLTRPEYLVPFLQPGRLVKVKNEFESFDWGIIVNFKKKLPKNPVK
DKTVIVIDVLLHISKDSKETSLIPCREDEEGEMEVVPILHYLITHISSLRLYYPKDLRPS
DNRRSVLKTIREVKKRFPDGPPLLNPITDMRIEDQAFKEIVKKIETLEKRLYAHSLHKDP
NVNELYERFLHKEELAAQLKQAKEEFKQAKSILQMDELKCRKRVLRRLAYCTSADVIELK
GRVACELNGADELLMTEMIFNGLFNALSVPQMVALISCFVCDEKSNEMPKSTEELSGPLR
QMQDLARRIAKVSTEANLELDEDAYVDRFKPYLMDVIYAWSKGATFLQICKMTDIFEGSI
IRCMRRLEEVLRQLCQAAKGIGNADLEIKFSEAIKLIKRDIVFAASLYL
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatttctctgaggacttgtttgacgtttttgacgagcagggcgacgatatagaa
attccagaggcaaagaaagtcgagaccgatgtaggaacgaagcgacaatgtgacaagcaa
gatgatgatatctcaggtgtaaaaaagttccgacaggaccctatcttggatgatatcaat
ttagaggaagtggcatgtcgtataacagtacacactgtagataccataagatcttgcacg
cacgaagttgctattcctcctgaccaagaatatatatctctggaacataaacagggcaag
ccagccaaagaatacaaattcatacttgatcctttccaaaaagaagcgattctttgcatt
gagaacaatcagtcggttcttgtttctgcgcacacatcggctggtaaaacagtggtggct
gaatacgcgatagcaatgtcactcaaggaaaagcagagagtaatatacacaactcccatc
aaagcattgagcaatcagaaatacagagaattttatgaagaatttagggacgttggtttg
gtaacaggcgacgttaccataaatccaacagccagcgtgttaattatgactactgagatt
ttgcgtaatatgctgtacagaggttcagaggtaatgcgcgaggtcggttgggtgatattc
gacgaaatacattacatgcgtgacaaagaaagaggcgtggtgtgggaagagacgcttata
ctgctgccggacaacgtgcactatgtatttctttccgctaccataccgaatgcgaggcaa
ttcgcagagtgggtgacacatttgcacaatcaaccctgtcacgtggtatcgacggactac
agacccactccgttgcagcattacatatttccagtcggcggtgatggcattcatctggtt
gtagacgaaaacggtcagtttaaagaggacaattttaacagagccatggcgtgcctgcag
aacactggggacgcggctaagggtgacacgaaaggacgtaaaggtggtatacgcgccacg
aacagcggacacacgaacatcttcaagatgataaaaatgatcatggagagaaacttcgca
cccgtgataatattcagcttttcgaaaaaggactgcgagctctacgcgatgcaattggcc
aaattggatctgaacacaatggaggagaaaaaattggtggatgaggtgtttaacaacgcg
gtggacgttcttaacgacgaagacaagaaattgccgcaggtcacgaacttgttgccgctt
ctgcgacgcggaattggcattcatcacggtggacttctgccaattctgaaggaaacagtt
gagatattattcggagaaggcctgatcaaagctctctttgctactgagacgttcgcgatg
ggcttgaacatgccggcccgcactgttctgttcacggcgccgcgcaaattcgacggcaaa
gacttccgttggatcacatcgggtgaatacattcaaatgtccggtcgcgccggcagaaga
ggtctggacgagaagggaatcgttatattgatgatagacgagcaagtaaatccggccgta
ggaaaggctattgttcaaggtaaaccagacccgatcaattccgcgtttcatctgacctac
aacatggtccttaatcttctccgtgtggaagaaattaatccagaatacatgttggaaaga
agtttttttcagtttcaaaatcaagctagtattccagctttgtacaataaggtgaaagag
ctgtgcgatgcgtacaacgtcgtgaccgtcgagcggtatgacgagatatcttcctatcac
gacatacgcgaacaactcaaccgtttgacagaacagttccgatcgtttttaacccggccg
gagtatctggttccgtttttacaacctggcagactggtgaaagtgaaaaacgagttcgaa
tcgttcgattggggcatcatagtgaattttaagaaaaaacttccaaaaaatccggtaaaa
gacaagaccgttatcgttatcgacgttttgcttcacatatcgaaggattctaaggagacc
agccttattccgtgtcgcgaggacgaagaaggcgagatggaagtggttcctattttgcat
tatctgatcactcacatcagttcgctcagattgtactacccgaaggatctcagaccgtct
gacaacagaaggagcgttctgaaaacaatacgcgaagtgaagaaaagattcccggatggt
ccgccgttgctcaatcctattacagatatgcgtatagaggaccaggctttcaaagaaata
gtgaaaaaaatcgaaacgttagaaaaacgactgtacgcacattccttgcacaaagatccc
aatgtgaacgaattgtacgaacgatttttacacaaggaggaattggctgcgcagctcaag
caggcgaaagaggaatttaaacaggcgaaatcgatacttcaaatggacgagctcaagtgc
agaaaacgagttttgcgaagactggcgtattgcacgtcggcggatgtgatagaactgaaa
ggacgcgtagcatgcgaactgaacggcgccgacgaactattgatgaccgagatgatcttc
aacggtctttttaacgcgttaagcgtgccccaaatggtggcgttgatcagttgttttgta
tgcgacgaaaaatcaaacgaaatgcccaagagcaccgaggagctaagcggtccgctcaga
cagatgcaggacctggctcgaagaatagcgaaggtctcgaccgaagccaatttggagtta
gacgaagacgcgtacgttgatcggttcaaaccttatctcatggacgttatatacgcttgg
tctaaaggcgcaacgttcttgcaaatttgcaaaatgacagacatatttgaaggatccatc
atcagatgtatgcgtcgcttggaggaagtgcttcgacaattgtgccaagccgcaaaaggt
attggtaacgcagacctagagattaaattcagtgaagcgatcaaactcataaagcgagac
atcgtattcgccgcgtcgttatatttatga
DBGET
integrated database retrieval system
