Pseudomyrmex gracilis (graceful twig ant): 109854415
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Entry
109854415 CDS
T05003
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03013
Nucleocytoplasmic transport
pgc03015
mRNA surveillance pathway
pgc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109854415
09122 Translation
03013 Nucleocytoplasmic transport
109854415
03015 mRNA surveillance pathway
109854415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgc03019
]
109854415
03041 Spliceosome [BR:
pgc03041
]
109854415
Enzymes [BR:
pgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109854415
Messenger RNA biogenesis [BR:
pgc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109854415
Spliceosome [BR:
pgc03041
]
Complex C
Other components
EJC/TREX
109854415
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109854415
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109854415
NCBI-ProteinID:
XP_020283065
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDVPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKTVCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITMVSDESDAKILNDVQERFDVNITELPDEIDLASY
IEGR
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggataatgatgatctcttggattacgaagatgaagaacagactgaacaagtagtt
gatgggagcggagatgttcctgcaaaaaaagaagtcaaaggcacatatgtctctattcac
agtagtggattcagggattttctccttaaaccagaaattttacgtgctatagttgattgc
ggatttgaacatccatctgaagtacaacacgaatgtattcctcaagctgtacttggcatg
gatatactgtgtcaagcaaaatctggcatgggaaaaactgctgtatttgtactagctaca
cttcagcagttagaattaacagaaaatcaagtctatgtcctagtaatgtgtcatacccgg
gaactagccttccaaatcagtaaagaatatgagagatttagcaaatacatgccacatgta
aaagttggtgtattctttggtggtttacctatccaaaaagatgaagaagtattgaaaact
gtatgcccccatattgtcgttggcacccctggtcgtatcctcgctcttgtacgtaataag
aagttaaatctgaagcatctcaagcattttatacttgatgaatgtgacaagatgcttgag
ttattagatatgcgccgggatgtacaggaaatatttagaagcacaccacacagcaagcaa
gtcatgatgttcagcgccacgttatctaaggagatacgtcctgtctgcaaaaagttcatg
caagatcccatggaagtctatgtcgatgacgaggcgaagcttactttgaatggtctgcaa
caacattatgttaaattgaaggaaaacgagaagaacaagaagttatttgaactactcgat
gttcttgagtttaatcaggttgtcatatttgtaaagtctgtacaaagatgtatggcttta
gcgcaactcttaacagaacagaatttccctgcgattgggattcatcgaggcatgacgcaa
gaagagcggctgtccagatatcaacagttcaaagatttccagaagcgtattttggtagcg
acaaacttattcgggcgaggtatggacatagaacgtgtaaacattgtattcaattatgat
atgccagaggattctgatacatatcttcatagagtagcgcgcgctggtcgttttggcact
aagggtcttgccattacaatggtaagcgatgaaagcgatgccaaaatattaaatgatgtt
caagaaagatttgacgtaaatattacagaattacctgacgaaatcgatctcgcttcatac
attgaaggacgatga
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