Pseudomyrmex gracilis (graceful twig ant): 109854528
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Entry
109854528 CDS
T05003
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109854528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgc03041
]
109854528
03009 Ribosome biogenesis [BR:
pgc03009
]
109854528
Enzymes [BR:
pgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109854528
Spliceosome [BR:
pgc03041
]
Complex A
U2 snRNP components
U2 related factors
109854528
Complex B
109854528
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109854528
Ribosome biogenesis [BR:
pgc03009
]
Eukaryotic type
90S particles
Helicases
109854528
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
Cas3-like_C_2
ResIII
AAA_25
T2SSE
ABC_tran
AAA_7
Flavi_DEAD
AAA_16
TsaE
Motif
Other DBs
NCBI-GeneID:
109854528
NCBI-ProteinID:
XP_020283291
LinkDB
All DBs
Position
Unknown
AA seq
718 aa
AA seq
DB search
MSKRRIEVVDPYVKRKADGSTSNSATATGSTAAKSQVQFNPYTLLPYTPRYYELYKKRIT
LPVFEYRTDFMRLLSQHQCIVLVGETGSGKTTQIPQWCVEYSRGIGNKGVACTQPRRVAA
MSVAQRVSEEMDVALGQEVGYSIRFEDCSSPRTVLKYMTDGMLLREGMSDPMLDAYQVIL
LDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHP
VEIFYTPEPERDYLEAAIRTVIQIQMCEEIPGDLLLFLTGQEEIEEACKRIKREMDNLGP
EVGELKCIPLYSTLPPNLQQRIFEPAPCTKPNGAIGRKVVVSTNIAETSLTIDGVVFVID
PGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDNT
YPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDL
GAIMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMKFA
HIDGDHLTLLNVYHSFKQHMDDVQWCYDNYVNYRSLKSGDNVRQQLSRIMDRFLLKRTST
DFNSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQVVQLHPSSCLDHKPEWVIYNE
FVLTTKNYIRTVTDIKPIWLLTIAPQYYDLQNFPQCEAKRQLEMIQAKLESKPYQEGF
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgcaggatcgaagttgtggacccttacgttaaacgaaaagcagatggctca
acatccaacagcgcaactgccacaggatccacggcggccaagagtcaagtgcaattcaat
ccctatactttgctaccgtacacaccaagatattatgaactttataagaagaggataact
ctaccagtatttgaatatcgtactgacttcatgagattgttatctcagcatcaatgtatt
gttcttgttggagaaactggttctggcaaaaccactcagataccacaatggtgtgtagag
tattcaagaggtattggaaacaaaggagttgcttgtactcaacccaggagagtagcagca
atgagtgtggctcaacgagtttcagaggaaatggatgttgccttaggtcaagaagtagga
tatagcattcgctttgaagattgtagttcaccaagaactgtattaaagtacatgacagat
ggtatgttacttcgtgagggtatgtctgatcccatgttggatgcatatcaagtgatattg
cttgatgaagctcatgaaagaacgttagctactgacttgcttatgggtgttttgaaagaa
gtgatcaaacagagaccagacttgaaacttgtgattatgagtgctaccttagacgccggc
aagtttcagcagtattttgataatgcaccgcttatgaatgtacctggtagaacacatccg
gtcgagatattttatacgccagaaccggaaagggattatctggaagctgcaatcaggact
gtcattcaaattcagatgtgtgaggaaattcctggtgatcttttgctgtttctaactggc
caggaggaaatcgaggaagcatgcaagagaattaaaagagaaatggataatttgggacca
gaagtcggtgaattgaagtgtataccattatattcgaccctgcccccgaatcttcaacag
agaatatttgaacctgctccatgcaccaagcccaacggtgctattggtcgtaaagttgta
gtatcgactaacatcgcagaaacgtccttaactatcgacggagttgtctttgtgatagat
cctggttttgccaagcaaaaagtgtacaatcctagaattcgtgttgagtcacttttagtg
tcgcctattagcaaagcctcggcgcagcaacgagccggtcgagctggtagaacacggcct
ggaaagtgctttagattatatacggaaaaggcgtataaaaacgagatgcaggataatacg
tatcctgagatattgcgttcgaatttgggaagtgtcgtgttgcaactgaagaaacttggt
atcgatgacctggttcattttgattttatggatccacctgcacctgaaactcttatgaga
gctttggaattgttgaattatcttgcggctcttgacgatgacggcaacttgacagatctc
ggagcaattatggcggaatttccactcgatcctcagttggcaaaaatgcttatagcgtct
tgcaatcataattgcagtaatgagatactcagcatcacagctatgctctcagtcccacag
tgctttgtgagaccgaacgaatcaaagaaggccgcagatgacgcaaaaatgaaatttgca
catatcgatggtgatcacctcacgttgcttaacgtgtaccattcctttaaacaacatatg
gacgatgttcaatggtgttacgacaactatgtaaattatcggtctttgaagagcggagac
aacgtgagacaacagttgagcagaataatggatagatttttgttgaagcgcacgtcgacg
gattttaattcgaaggattattacattaacattagaaaagctcttgttaatggctttttt
atgcaggtggctcatttagagaggactggacattatctaactataaaagataatcaggta
gtacagcttcatcccagcagttgtctggatcacaaaccggaatgggttatttataacgag
ttcgtgctcactactaaaaattacataagaacagtcactgatattaaacccatatggttg
ctaacgatagcgcctcaatattacgatttacaaaatttccctcaatgtgaagcaaaaaga
caactggaaatgatccaggcaaagttggagtcaaagccgtatcaagaaggcttctaa
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integrated database retrieval system
