Pseudomyrmex gracilis (graceful twig ant): 109855294
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Entry
109855294 CDS
T05003
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pgc03016
]
109855294
Enzymes [BR:
pgc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
109855294
Transfer RNA biogenesis [BR:
pgc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
109855294
Prokaryotic type
tRNA splicing ligases
109855294
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
109855294
NCBI-ProteinID:
XP_020284973
LinkDB
All DBs
Position
Unknown
AA seq
439 aa
AA seq
DB search
MVVRQYQEELKYLEKITEYCWKIKKGFQPNMKVEGVFYVNNSLERLMFEELRNACRPGAV
GGFLPGMKQIANVAALPGIVYRSIGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFD
INCGVRLLRTNLFENDVLPIKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDXEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SPEGQDYLKSMAAAANFAWVNRSSMTFLTRQAFAKQFHSSPDDLDMHVIYDVSHNIAKIE
EHIVEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSFVL
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaagacaatatcaagaagagctcaaatatttggaaaaaataacagaatattgt
tggaaaataaaaaaaggctttcaacctaatatgaaggttgaaggcgtgttctatgtaaac
aattcactggaacgtttgatgtttgaggaattgcgcaatgcatgtcgaccaggtgcagtt
ggaggttttcttccaggaatgaaacagattgctaatgttgcggctctgcccggtattgtg
tatagatccattggattaccagatgtacattctggatatggctttgctattggtaatatg
gcagcatttgatatggatgatcccaaatcaattgtatcacctggtggcgtaggctttgat
ataaattgtggtgttcgtttgttacgaacaaacttatttgagaatgatgtcttaccaata
aaggaacaacttgcgcaaagtatgtttgaccatattccagtaggtgttggatcgaaagga
attatcccaatgaatgcgcgggatttggaagaagcattagaaatgggaatggactggtct
ttgagagaaggttacatttgggcagaggataangaacattgcgaggaatatggaagaatg
ctgaatgccgatccatcaaaagtatcaatgagagctaagaaacgcggactccctcaatta
ggtacattaggagctggaaatcattacgcagaaattcaagtggtagacgaaatatacgat
aaatgggcagcgtgtaaaatgggtattgaagaaaagggacaaatttgtgttatgatccat
tcaggaagcagaggatttggacatcaggtcgctacagatgcacttgtacaaatggaaaag
gctatgaaacgtgataatatagaaactaacgataggcagctcgcatgcgctcacattaaa
tcaccagaaggacaggattatttaaaatcgatggcagctgctgcaaactttgcatgggtt
aatagaagttctatgacatttcttactcgacaggcatttgcgaaacaatttcattcatct
cctgatgacttggatatgcatgttatttatgatgtttcccataatattgcgaaaatagaa
gagcacattgttgaaggaaagcagaagacccttttagttcatagaaagggatcaacaaga
gcttttccaccacatcatcctttgattcctgtagactatcagttaacaggacagccagtt
ttaatcggtggtacaatgggaacttgcagttacgttttgactggtacagaacagggtatg
aaagaaacatttggatcaacatgtcatggcgctggtcgtgctctctcatttgttttatga
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