Pseudomyrmex gracilis (graceful twig ant): 109856135
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Entry
109856135 CDS
T05003
Name
(RefSeq) ATP-dependent RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109856135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgc03019
]
109856135
03012 Translation factors [BR:
pgc03012
]
109856135
Enzymes [BR:
pgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109856135
Messenger RNA biogenesis [BR:
pgc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109856135
Translation factors [BR:
pgc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109856135
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
AAA_22
ATPase
ResIII
nSTAND3
AAA_14
AAA_19
NPHP3_N
ATPase_2
ABC_tran
NACHT
T2SSE
PhoH
AAA_16
Motif
Other DBs
NCBI-GeneID:
109856135
NCBI-ProteinID:
XP_020286669
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MNKYYWTNIINKVLIFSKMAHWHDRRRMSNSFSRRNREDQQVYSSGEGQMQNQRHPPGLR
GKAIGLYYRDRNRQKHEKEKIPSVLKLSTQVEEKLKTILSNSKMFFNSVYNDRSSERLDS
VHNNKYHHIGDSQFKRKFLEIINGNIQHNLIKAMKTPSKLQRDREIDKRLLNEYKEKQIQ
SDYLNMLNFRTKLPVFDKKSEILQLIEENQVIVVSGETGCGKTTQVAQFILDGQLEAGNG
SITRIACTQPRRISAISVAERVAAERAEKLGKSVGYKIRLEQVPSREEGSILFCTTAMLL
QFMKTDPALKSFSHVILDEIHERTTESDFIITLLKQIIPSRPDLKVILMSATLNSESFSK
YYNNCPIIHIPGFTFPVEEFYLEDILSFTGFRFQDPSPEPSGYKKHIKKNKVRQHKKDEF
LEILQPYVRELRAERKYSESVLEQLKNPNSEDLSLELVERLVRYISDTKDPGAILIFLPG
LMDITKLNRMMIDSRCYPDHKYFICSLHSRMPTVDQKLIFKEPPNGIRKIIIATSIAETS
ITIEDVVYVIDCGKIKFGKFDVDKNIQTLEPEWVSLANAKQRRGRAGRVKSGECYRLYSK
AREMTFDHYPLPEMLRTRLEEVILQIKILQLGKTKEFLTNVMDPPDLKAIDLSLDLLRTL
NALDKDERLTPLGYHLAQLPLDPRTGKMILWAALFSCVEPIFAIAASLTFKDAFYCPLDK
EQQANEKKLKLSREQHSDHIALAEALRSYEVARRRGDAGRFCREYFLSFNTLKLLSEMKN
QFARYLYEMKFLDSDNPSDGSANRNSDNMALIKAIVCAGLYPNIATVRRCTKNGLICWTP
EDGSVRTHPSSVNDKIKEFPSRYLTYFTKQRSTAIFLHDTTFVSLPMLLFAGSNITIRKE
KGNYVIGNFNFSDNIVCEPRTVEVIQELQRALNTLLEYKVAHPASVSWSTIEGDLLNAII
ELVSQNDHEIGFDVKSGNDDDATDL
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatactattggacaaatattattaacaaggttcttatattttcaaaaatggca
cattggcacgatcgtagaagaatgtccaactctttttcacgacgtaacagagaagaccaa
caagtttactcatctggtgaaggacaaatgcaaaaccaaagacatcctcctggacttagg
ggaaaggcaataggattgtattacagagacagaaacagacaaaaacatgaaaaagaaaaa
ataccatcagttcttaaattgtctactcaagtagaagaaaaactcaaaactattttaagt
aattccaaaatgttttttaattcagtttataatgacagatcatctgaaagacttgactct
gtacacaataacaaatatcatcatattggagattcacaatttaaaaggaaattcttagaa
atcataaatggtaatattcagcacaatcttatcaaagctatgaaaacgccatcaaaactg
cagagagatagagaaatagacaagaggttactaaatgaatacaaagaaaagcaaattcaa
agtgactatttaaatatgttaaactttcgaacaaagttgccagtgtttgataaaaaatca
gaaatattacaactgattgaagaaaatcaagttattgtagtaagtggagaaacaggttgt
ggtaaaactacacaagtcgcacagtttatattggatggccaattagaggctggaaacggt
agtattacccgaatagcttgcacgcaacctagaagaatttcagcgatttctgttgctgaa
cgtgtagctgcagaaagagcagaaaaacttggaaaatctgttggctataagatacgacta
gaacaagttccatcacgagaggaaggaagtatattattttgtaccactgctatgctacta
caatttatgaaaactgatccggcattgaaaagtttctctcatgtgatactggatgaaatt
cacgaacgtactacagaaagtgattttattatcacattgttgaaacaaattattcccagt
agacctgatttaaaagtcattttgatgagtgcaacattgaattctgaaagtttttcgaaa
tattacaacaattgtccgatcatacatatacctggattcacttttccagtagaagaattt
tacttagaagatattctatcatttacaggatttagatttcaagatccaagtccagaacct
tctggttataaaaaacatataaaaaaaaataaagtgcgtcaacataagaaagatgaattt
ttagaaatattacaaccttacgttagagaattgagagcagagagaaaatactcggaaagt
gtacttgaacaattgaagaatccgaatagcgaagatctttcgttagaacttgttgaaaga
ttagtaagatacatctctgatacaaaagatcccggagctattcttatctttttacccgga
ttgatggatataacaaagttaaacagaatgatgatagattctagatgttacccggatcat
aaatatttcatatgttctcttcattcgcgcatgccgacggttgaccagaaacttatattt
aaagaacctcctaatggaattcgtaaaataatcatagcgacttcaattgctgaaacatcg
ataactatagaggacgtggtgtatgtaatagattgtggaaaaataaaattcggaaaattt
gacgttgacaaaaacattcaaactttagaacccgaatgggtgtctttggccaatgcgaag
caaagacgcggtagggccggcagagttaaaagtggcgaatgttaccgtttgtattcgaaa
gctcgtgaaatgacttttgatcattatccactgccagaaatgttgagaacgcgcttggaa
gaggtaatcttgcagataaaaattttgcaattaggaaagaccaaagaatttctaactaac
gttatggatccgccagatttaaaagccattgatctgtctctcgatttactcagaacactc
aacgctcttgacaaagacgagcgtttgactcctctgggttatcatttagcgcagttaccg
cttgatcctagaacaggaaaaatgatactttgggcggcattgttctcttgcgtcgaaccg
atattcgctattgcggctagccttacatttaaagatgccttctactgccccttggacaaa
gaacaacaagctaatgagaagaagttaaaactcagtagggaacaacatagcgatcacatc
gctctcgcggaagctttaagatcgtatgaagttgcgcgcagaagaggagacgctggtcgc
ttttgccgggagtattttctctctttcaatacattaaagcttctgtccgagatgaagaat
caattcgcgaggtatttgtacgagatgaagtttctcgacagcgacaatccgagcgatgga
agcgctaatagaaattctgacaacatggcgttgataaaagccattgtctgtgcgggattg
tatcctaacatcgctactgtaagacggtgtactaaaaacggtctgatatgttggacgcca
gaagatggatcagtgcgtacacatccgtcgagcgtgaacgacaaaattaaggaatttcct
agccgatatttgacatattttacaaagcaacgatccaccgctatatttttacacgacacc
acgtttgtaagcctgccaatgttattgtttgcaggatcgaatataacaataagaaaggaa
aaaggaaattacgttatcggcaactttaacttttctgataatattgtttgcgagccacga
actgtagaggtgatacaggaacttcaacgcgctttgaataccttgttggagtacaaagtt
gcgcatccagcgtccgtatcttggtcgacaattgagggagacttgttaaatgcgatcatc
gaactggtatctcaaaatgaccacgagataggtttcgacgtcaagagcggtaatgacgac
gatgccactgatttataa
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