Pseudomyrmex gracilis (graceful twig ant): 109856304
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Entry
109856304 CDS
T05003
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03420
Nucleotide excision repair
pgc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109856304
09124 Replication and repair
03420 Nucleotide excision repair
109856304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pgc04121
]
109856304
03400 DNA repair and recombination proteins [BR:
pgc03400
]
109856304
Ubiquitin system [BR:
pgc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
109856304
DNA repair and recombination proteins [BR:
pgc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
109856304
TCR (transcription coupled repair) factors
Cul4-CSA complex
109856304
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
109856304
NCBI-ProteinID:
XP_020287015
LinkDB
All DBs
Position
Unknown
AA seq
1138 aa
AA seq
DB search
MKAMSYHYVVTAHKPTAVNGCVTGNFTSPTDLNLILAKNVRLEIYLVTPEGLRPLKEVGI
YGKIAVIKFFRPAHENKDLLFLLTTRYNAMILECIGEGEDIEIITKAHGNVADRIGKASE
TGIKAVIDPKSRVIGLRLYDGLFKIIPLDKDNPELKASSIRMDEQQVQDVNFLYGCANPT
LILIHQDINGRHVKTHEINLREKEFSKIPWRQDNVEREAMMVIPVPSPICGAIIIGQESV
LYHDGTTYVTIVPPIIKQSTITCYAKVDTQGLRYLLGDMAGHLFMLFLEVEKKPDGSHVV
KDLKVELLGEISIPECITYLDNGVIYVGSRLGDSQLIKLITKADENGSYCVPMETFTNLA
PIVDMAVVDLERQGQGQMVTCSGAFKEGSLRIIRNGIGIQEHASIDLPGIKGMWALKVGG
GNFDNTLVLSFVGQTRILTLNGEEVEETDIPGFVADEQTFHTGNVTNDLFIQVTPTSARL
ISHESKMVVSEWEPQNKRTISVVACNGTQLLCATGNDLFYMEITCNQIVAKGFTTLEHEV
ACLDISSLDGLSEAKIVAVGLWTDISVRILTLPTLDQINKELLGGEIIPRSILMTCFEGN
TYLLCALGDGSMYYFTLQRQSGILTDKKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVI
YSSNHKLVFSNVNLKEVNHMCSLNAESYPDSLALATDSTVTIGTIDEIQKLHIRTVPLGE
SPRRIAYQESSQTFGVITMRVDVQESSGVNIVRPSASTQASSSSHIASHNKPSGHTASEI
GQEIEVHNLLIIDQHTFEVLHAHTLMPTEYALSLISTRLGEDPTSYFVVGTAFINPDETE
PKMGRILLYHWSDGKLTQVAEKEIKGSCYSLVEFNGKLLASINSTVRLFEWTAEKELRLE
CSHFNNIIALYLKTKGDFVLVGDLMRSLTLLQYKTMEGSFEEIARDYNPNWMTAIEILDD
DTFLGAENCFNLFVCQKDSAATSEDERQQMQEVGQFHLGDMVNVFRHGSLVMQNLGESST
PTMGCVLFGTVSGAIGLVTQIPFAFYEFLRTLEDRLNSVIKSVGKIEHNFWRSFNTDLKI
EQCEGFIDGDLIESFLDLNHDKMAEVAMGVMIDDGSGMKKEATVDDLVKIVEDLTRIH
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctatgtcatatcattacgttgtgacggcacacaaacccacagctgtcaatggc
tgcgtgaccggtaattttacttcaccgacagatctgaatctgattctggctaagaatgta
cgtttggagatatatcttgtaacgccagagggtctgagacctctgaaggaagtcggaatc
tacggcaaaatagccgttatcaagtttttcaggccagcgcatgagaacaaggacctctta
tttttgttaacaacacgttacaacgctatgattttggaatgcattggggaaggagaagac
attgaaataataacaaaggcacatggaaatgtagctgatcgaattggaaaggcatcagaa
actggaatcaaggctgttattgatccgaagtcgcgagtaataggtctcagactgtacgat
ggactgttcaagatcatacctttagacaaagataatcccgaattgaaagcgtcctctatt
cgtatggacgagcaacaggtgcaagatgtaaatttcttatacggatgtgctaaccccact
ttaatcctgattcatcaagacatcaacggcagacacgttaaaacgcacgagatcaacttg
agagaaaaagaattctcaaagataccttggagacaagataatgtagaacgagaagccatg
atggtaattcctgtgccgtctcctatttgcggcgctattataataggacaagagagcgtt
ttgtatcacgatggcaccacgtatgttaccattgtgccaccgattattaagcagagcacc
atcacctgctacgctaaagtggatactcaaggactaagatatttactgggcgatatggcc
ggtcatctgtttatgttatttttagaagtagaaaagaagcccgacggatcgcacgtggta
aaagatctaaaagtagaattactgggtgagattagtataccggaatgcataacttatttg
gataatggcgtgatatacgtcggcagtcgtctaggagattctcagctgatcaaactgatc
accaaggcggacgaaaacggatcttactgcgtacctatggagaccttcaccaatttggcg
ccaattgtcgatatggccgtagtggatttggaaagacaagggcagggacaaatggttaca
tgctcgggtgccttcaaagagggttctctcagaatcattcgaaacggcataggtattcag
gagcacgcaagcatcgatctgccgggcatcaagggcatgtgggctctcaaggtcggcggc
ggtaacttcgacaacacgttggtgttgtcgtttgtcggacagaccagaatcttgactctg
aacggcgaggaagtggaggaaaccgatataccgggtttcgtcgcggacgagcaaacgttt
cacacgggcaatgtgaccaacgatttatttatacaggtcactcctacgtccgccagattg
atctcgcatgagagcaaaatggtcgtctccgagtgggaaccgcaaaacaagagaaccatc
agcgtggtcgcctgcaacggcactcaacttctgtgcgctaccggtaatgatcttttctac
atggagatcacgtgcaatcaaattgtagccaaaggatttactactctggagcatgaggta
gcgtgtctggatatctcgtccttggacggtctcagcgaggctaagatcgtcgccgttggt
ctctggacagacatatctgttcgcattttaacgctaccaactctagatcagatcaacaaa
gaactccttggcggagaaatcatcccaagatcaatattaatgacttgctttgagggtaac
acgtacttattgtgcgctctgggcgacggcagcatgtattatttcactctgcagcgacaa
tccggtattctcacggacaagaaaaaagtcaccttaggaacgcagcctacagtcctgcgc
acttttaggtcgctgtccacgacgaacgtattcgcctgttcggacagacctactgttatt
tattcatcaaatcacaaactcgtctttagcaacgttaatttgaaagaggtgaatcacatg
tgctcgctcaacgccgagtcgtatcccgacagtctggctctggcgaccgatagcacggta
acgatcggcaccatcgacgagattcaaaagctgcacataagaacggtcccgctcggagaa
tcaccaagacggatcgcttatcaggagagctcgcaaacctttggcgtgattacgatgcgt
gtggacgtgcaggagagcagcggcgtgaacatcgtcaggccgtccgcatccacccaggcg
tcaagcagcagtcacatcgcgtcgcataataaaccgagtggacacacggccagcgagatc
ggccaggaaatcgaagtgcacaatcttcttataattgatcagcacactttcgaggtattg
cacgcgcatacattgatgcctacggaatacgctttatccttgatctctacaagattgggt
gaagatcctacgtcttatttcgtggttggcactgcctttatcaatcccgacgagaccgaa
ccaaagatgggaagaatattgctgtaccactggagcgatgggaagctgactcaagttgca
gagaaagagattaaaggttcatgctattcattagtagaattcaatggaaagctactcgca
agcattaacagtacggtgcgattgtttgagtggactgccgaaaaggaactcaggctagag
tgttcgcacttcaacaatataattgctctctatctgaaaaccaaaggtgattttgtctta
gtgggagatctcatgagatccctcactctgttgcaatataaaaccatggaaggcagcttt
gaagaaatagctagggactacaatccaaattggatgacagctattgaaatactagatgat
gatactttcttaggtgctgaaaattgtttcaatctcttcgtttgccagaaagacagcgcc
gcgacttccgaagacgagcggcaacaaatgcaggaagttggccaatttcacttgggcgac
atggtcaatgtcttccgacacggttcgctggtgatgcagaatctaggagaatcgagtaca
cccaccatgggttgcgtgttgttcggaactgtcagcggggccattggcttggtgacgcaa
attccgttcgcgttttacgagtttctgcgcactttggaggatagactgaacagtgtgata
aaaagtgtaggcaaaatcgagcacaacttctggagaagtttcaacacggatttgaagata
gagcaatgcgagggatttatagacggcgatctgatagagagtttcctcgatttgaatcat
gacaaaatggcggaagttgctatgggcgttatgatcgatgatggtagcggcatgaagaag
gaagcaacggtggacgatcttgtaaaaatagtagaggatcttacaaggatacattaa
DBGET
integrated database retrieval system
