Pseudomyrmex gracilis (graceful twig ant): 109856725
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Entry
109856725 CDS
T05003
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03013
Nucleocytoplasmic transport
pgc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109856725
03015 mRNA surveillance pathway
109856725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgc03019
]
109856725
Enzymes [BR:
pgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109856725
5.6.2.5 RNA 5'-3' helicase
109856725
Messenger RNA biogenesis [BR:
pgc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109856725
mRNA cycle factors
Common to processing body (P body) and stress granule
109856725
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
NAT10_TcmA_helicase
NPHP3_N
SRP54
DEAD
AAA_22
nSTAND3
ATPase
AAA_16
AAA_7
DUF7953
ArsA_ATPase
AAA_32
nSTAND_NTPase5
AAA_5
AAA
Motif
Other DBs
NCBI-GeneID:
109856725
NCBI-ProteinID:
XP_020287902
LinkDB
All DBs
Position
Unknown
AA seq
1108 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDATQTQSSQ
PVQINGTNGSSSVVSAAAQSLAELQFEEEEEEAYYNRELPEHACKYCGIHEASCVVMCNV
CRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGALGETILECYSCATRNVFLLGFIPA
KADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIDDRCFLTWLVKIPSDQEQLRARQMSA
QQINKLEELWRDNVEATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKR
LKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSGIGH
VIKIPDNYGEEVGIELKNNSGAPTECTSNFVVDFIWKSTSFDRMQSALRKFAVDDSSVST
YIYHRLLGHDVDEVLFRCHVPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGTGKT
VTSATIVYQLAKQQSGPVLVCAPSNTAVDQLTEKIHKTNLKVVRLCAKSREAIDSPVSFL
ALHNQIKNMDTNTELQKLQQLKDETGELSSADEKRYRLLKKTAEKELLEAADVICCTCVG
AGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAG
LSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPW
PVPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPYEGQ
RAYLVQYMQYQGSLHSALYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRL
NVALTRAKYGIIIVGNPKVLSKQPLWNHLLTFYKEQKVLVEGPLNNLKESMIQFAKPKKL
VNSANPGSHFMSTSMYDAREALIPGSVYDRSGTQMNGTQNSYYQRNMSVDVFSRTHDTIS
YISPERAQAAMNNVPVPVGVFMNMHHVPPRFFQMRQNQRNRRGAAASARNKTGPRIGKLS
QTEQNTQPYSQPGLQLTQGTTPGMSQPGFSLSQPGLSQAELSQDSFAVGEFQSQMDGLLS
QDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgacgcgtacgggccgagtagccagaccctcacgtttctcgacaccgaggaa
accgatctgatcggcgcggacacccagggcagcgagttcgacttcaccgatttcacgtta
ccctcgccgagtcagacccaggcttcgcaacacgacgcgacccaaacgcaatccagccag
cccgttcagataaatggaaccaatggtagttcatcggtagtttcggcagcggcccagagt
cttgctgagttgcaattcgaagaggaagaagaggaagcttactacaatcgcgagttgccc
gaacatgcttgtaaatattgcggcatccacgaggcgtcctgcgtggttatgtgtaacgtc
tgtcgcaaatggttttgcaacggacgtggaaatacatcaggatcgcacattatcaatcat
cttgttcgagccaagcataaggaagtcactttacacaaagatggtgctcttggagaaact
attttggaatgttattcctgcgccacgagaaatgtttttttattgggttttattcctgct
aaagccgattcggttgttgtgctgctttgtcgccaaccatgtgcagcacagagttcctta
aaagatatgaattgggatcaagagcagtggaaacctctgatcgacgatcgatgctttttg
acttggttagttaagattccatccgatcaagaacagttgagagccagacagatgtctgcg
cagcaaattaacaaattggaagaattgtggcgagacaacgttgaggccactttccaagat
ctcgagaaacctggagtggacgaggaaccgcagcaggttctgttgcgctacgaagatgga
tatcagtatcagaatatttttggtcctcttgttaagctagaagctgattacgacaaacgc
ttgaaggagtcgcaaactcaagaaaatatcgaggtacgttgggacgttggattgaataag
aagaccatcgcttacttcatgctggccaagacggacggggatatgaaactgatgcacggg
gatgaactgagacttcgttatctaggagagcttcataagccttggtccggaatcggacac
gtgattaaaattcccgacaattatggagaagaagtgggaatcgagttgaaaaacaattct
ggagcaccgacagaatgcaccagtaactttgttgttgacttcatttggaagagcacgagc
tttgaccgtatgcaatctgcattacgtaaatttgctgtggatgactcatctgtttcgact
tatatatatcatagacttttgggtcacgatgtggacgaggttttattccgttgtcacgtt
cccaagcacttcagcgcaccaaatctaccggatttgaacagatcgcaggtatacgctgtg
aaacatgcgatacaacgacctttgtcgttgattcaaggtccgcctggaacgggcaaaacc
gtgacaagcgccactatcgtctatcaattggcgaaacaacaaagcggtccggttctcgtg
tgcgctccctccaatacagctgtcgatcaattaaccgagaagatacacaagacaaatttg
aaagtcgtacgattgtgcgcgaaatcacgcgaggccattgattcgccagttagtttcctc
gcgctgcacaatcaaataaaaaatatggacacgaacaccgaattgcagaagttgcaacaa
ctgaaagacgaaacgggcgaattgtcgagcgcggatgagaaacgctatcggcttttgaag
aaaacggcggaaaaggaattgttggaggcggctgatgtgatttgctgcacgtgcgtaggc
gctggtgatcccagactccacagattaaagttccactccatactgatcgacgagagtatg
caggctaccgaaccggagtgcatggtaccagttgttctcggagccaagcaactgattctt
gtcggggatcactgtcaattgggtccagtggtgatgtgcaagaaagccgccagagccggt
ctgtctcagtctcttttcgaaagattggtagtactgggaatcagacctttccgcttggaa
gtacaatatcgcatgcatcccgatctctcgaggttcccgtccaacttcttttacgaaggc
tctctgcagaatggcgtttgcgccgacgagagaaaactactcaagatcgattttccctgg
ccggtaccggacaagccgatgttcttttatgtcacccaaggccaagaagagatagccgga
agcggcacgtcctatttgaatcgtaccgaggcatccaacgtggagaaaatagcaacgcga
ttcttacgttgtggtgtcaaaccggagcagatcggagtgataactccgtatgagggccag
cgggcctatctcgtccagtacatgcagtatcaaggttctttgcattcggcgttgtatcaa
gaaatcgaggtcgcaagcgtggatgcttttcagggacgtgagaaggatatcataataatg
tcctgcgtaagatccaacgaacatcaaggcatagggttcctcaacgatcctagaagatta
aacgtggcgctgactcgcgcgaaatacggtatcatcattgtaggcaatcccaaggtgctt
tcgaagcagccgctctggaatcatctgttaactttctacaaggaacaaaaagtgttggtc
gaaggaccgttgaataatttgaaagaatccatgattcagtttgctaagccaaagaaactc
gtcaactcggcgaatccaggctcgcactttatgtcgacgtcgatgtacgacgcgcgcgaa
gctctgatcccgggatctgtgtacgatcgctccggcacgcaaatgaacggcactcagaac
tcctattatcaaaggaacatgtctgtcgacgtcttcagtcgtactcacgacaccattagc
tatattagtccagagcgggcacaggcggcgatgaataacgtgcctgtcccggtaggtgtg
tttatgaacatgcaccacgtgccgccgcgcttcttccaaatgcgccaaaatcagagaaat
aggcgcggagctgccgcatcggcaagaaacaagaccggtccgcgtattggcaagctcagt
cagactgagcagaacacgcagccgtacagtcagccaggtttgcagttaactcagggaacg
acaccgggcatgtcacaacccggattcagtctctcgcaacctggtctcagccaagctgaa
ctctcgcaggactcgtttgcggttggcgaattccaatcccagatggatggtctgctgtca
caggattccacttatcagggtgatcgaagtggtttctatcagtcaggtcagtcgcaagcc
ggaggacagttctcccagccctactga
DBGET
integrated database retrieval system
