Pseudomyrmex gracilis (graceful twig ant): 109856840
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Entry
109856840 CDS
T05003
Name
(RefSeq) uncharacterized protein LOC109856840
KO
K15542
polyadenylation factor subunit 2
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109856840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgc03019
]
109856840
Messenger RNA biogenesis [BR:
pgc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109856840
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_EML
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
EIF3I
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_RFWD3
eIF2A
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_WDR11_2nd
WD_LRWD1
Beta-prop_SPT8
WDR54
Motif
Other DBs
NCBI-GeneID:
109856840
NCBI-ProteinID:
XP_020288128
LinkDB
All DBs
Position
Unknown
AA seq
1049 aa
AA seq
DB search
MAANTQFAHPPPTVSLPNMSVPPPPTPNLSAPPPNLTTINTSGNYQHRYPNHRESNRGFF
KPFRPYHAPKIVVGQEPMMQDEFDGKRLRKSVMRKTVDYNSAIIKSLENRVWQRDYRDRK
ALQPDVMYYPDLLPPPSYIDNPINAVTTRFVKTATNKMRCPIFCMAWTPEGRRLVTGASS
GEFTLWNGLTFNFETILQAHDSPVRTMVWSHNESWMVTGDHAGYVKYWQSNMNNVKMFQA
HKEAIRGLSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSLVI
SGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDVKWNENGNWLVTASRDHLLKLFDLRNL
SQEVQTFRGHKKEASSVAWHPSHEGLFCSGGSDGAILFWHVGADKEVGAIEQAHDSIVWT
LAWHPLGHILCSGSNDHTSKFWTRNRPGDLMRDKYNLNTLPAGTAGIDDHEVADEAAVIP
GMGPDDRINTDSENVENDKSGGIPGLDLDHAVDEGKKFANKKVPYSKPIPRNFQAQWNEM
EAEDIEQVEALNAFVNQLIETTPGAVPLNEVTPNAIILYGKMIPVEPGSKLAEAISKGTE
AINKLVFSGEIEELRDVVGPPDNIEETEDYLHDDGEIDYSKVPEVDLPPPLPSSKFAQNP
ELLKTLNRGGKRKFDQLIGWSDGGASDRTSKIHQPVFGGVFTEDSQSSDTDLRFGITKSS
VTGGEGNFFHSLGQDDDLRKSADPLRSSNHGDEDLRFNASSGTSWSSLRNEFDSRGNSFA
DKDFRSSGAFSSQKKSLDNDAYDDRERDRDGGHWDDEKVGDGPRGKSESNSFDKRDNGMV
MGSGGMGNSMHVMAGMSHLPNHHNMQNINPNMPPPPLMPHPNMPPHPGLQVKPPHPGLPG
MDGPMPPHLLPHPGMHFMPNGPPPGGFGPNFRPPPNSNFGPNHFRPSPLTPFGPNQGLPF
GNSFQGPPNFRGPNAGPFDRPGFGPNFRGQSSQGQMNSFNSNFGNFGKNGPNRGMSRGGG
DSLGRSGYNNRGRGRDNEQSRGGRGRDNY
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaaatactcaatttgctcatccaccgccgactgttagcttgcctaacatgtct
gtgccgccgcctccgactccaaacttatcggcgccacctccaaatttaactaccataaac
acatctgggaattatcaacatcggtatccaaatcacagagagagcaatcgtggtttcttt
aaaccgttcagaccttaccacgctcctaagattgttgtgggacaagaacctatgatgcag
gacgagtttgacgggaagaggctcaggaaatccgttatgcggaaaactgtcgattacaat
tccgccattatcaagagtttagaaaatcgagtatggcaacgagactacagggatcgaaaa
gcgctacaaccagacgtaatgtactatcctgatttattacccccaccaagttacattgac
aatcccataaatgcagtcactacgaggtttgtgaaaacggccaccaataaaatgcgttgc
cccattttttgtatggcctggacaccggaaggaagacggcttgtcacaggcgcttcaagc
ggagaatttactttgtggaatggcctaacattcaattttgaaaccattcttcaggcgcac
gacagcccggtgaggacaatggtttggtcccacaacgagagctggatggttacgggggac
catgcgggatacgtgaaatattggcagagcaatatgaacaacgtcaagatgtttcaagcg
cacaaagaagcgattagaggactcagtttcagcccaacggatcacaaattggcgacctgc
agcgacgacggaaccgttcgaatttgggactttcttcgttgtcatgaggagcgaattctt
aggggtcacggcgcggatgtgaaatgtgtgcactggcatccgcaaaaaagtctagtcatt
tctggcagcaaagacaatcagcaaccggttaagttgtgggatccgaagactggtcagtcg
ttggcgactcttcatgcacacaaatcgaccgtaatggacgtcaaatggaacgagaacggt
aactggttggttaccgcgtcaagagaccacttgttgaagctattcgatcttagaaatctg
agtcaggaagttcaaaccttccgcggtcataaaaaggaggcgtcgagcgtcgcttggcat
ccaagtcacgagggtctattctgtagcggaggtagcgacggcgcgatactcttctggcac
gtgggggcggataaagaagtaggagcgatcgagcaagcgcacgatagtatagtttggacc
ttagcttggcatccgttgggacatatcttgtgctcaggtagcaacgatcatacctctaaa
ttttggacgcgcaatagaccaggagacttaatgagagataaatacaatcttaacacattg
ccagcgggtacggctggtattgatgaccacgaagtcgctgacgaagcggcagtaatacct
ggaatgggaccggacgacagaatcaatacggacagtgaaaatgtcgagaatgacaaaagc
ggcggaattccgggattggacttggatcacgcggttgatgagggcaagaaatttgccaac
aaaaaagttccgtacagcaaaccgatcccgcgaaatttccaagctcaatggaacgaaatg
gaagctgaggatatagaacaagtcgaggcgcttaacgcatttgtcaatcagttaatagag
accacaccgggtgctgtgccgctgaatgaagtcacgcccaatgctattatattgtacggc
aaaatgattccagttgaaccgggttcaaaactagcagaagcgatcagtaaaggaactgag
gctataaacaaattagtattttctggcgaaatagaggagttacgcgacgtagtgggtccg
ccggacaatatagaggaaaccgaggattatctgcatgatgatggcgagatcgattattct
aaagtgcctgaagtagatctgccaccacccttgcctagctcgaagtttgctcagaatcct
gaactgttgaaaactctgaatcgtgggggcaaacgtaaattcgaccaattgataggctgg
agtgacggcggagctagcgatcgcacgtccaagatccatcaacctgtcttcggaggcgtt
ttcacggaagactcgcagtctagcgacaccgatctgagatttggtatcaccaagtcgagt
gtcaccggcggagaaggcaactttttccactctctcggccaagacgacgatctcaggaaa
tctgctgatccattgagaagcagcaatcacggggacgaggatctaaggtttaacgcgtcc
agcggaactagttggtccagtttgcgcaacgagtttgattcacgtggcaatagttttgcc
gacaaagatttccgcagctccggtgctttctcgtcgcagaagaaatcgcttgacaacgac
gcgtacgacgacagggaacgagatcgcgacggcggtcattgggacgatgagaaagtgggt
gacgggccgcgtggcaagtcggaaagcaacagctttgataaacgtgataatggaatggta
atgggttccggcggtatgggcaatagcatgcacgtaatggctggcatgtcccatctgccg
aatcaccataatatgcaaaacattaatcccaacatgccaccgccgccgctgatgccgcat
cccaatatgcctccgcatcctggcttgcaagtgaaaccgccgcatcccggattgcctggc
atggacggtcctatgccgccgcatttgctaccgcatccgggcatgcatttcatgcccaac
ggcccgccgcccggtggcttcggacccaacttccggccgccaccaaacagcaatttcgga
ccgaatcacttcaggccgagtccgttaacgccgttcggaccgaatcaaggcctgccgttt
ggcaacagctttcagggacctcccaactttcgtggaccaaacgcaggcccgtttgatcgg
ccaggtttcggacccaattttcgcggccagagttctcaaggtcagatgaacagtttcaac
tcgaattttggcaattttggaaagaatggacctaatcgcggtatgagtcgaggtggtggt
gacagtttgggccgaagcggttacaataaccgcggtagaggacgtgataacgaacagtca
agaggaggaagaggaagggacaattattga
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integrated database retrieval system
