Pseudomyrmex gracilis (graceful twig ant): 109858498
Help
Entry
109858498 CDS
T05003
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109858498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgc03019
]
109858498
03041 Spliceosome [BR:
pgc03041
]
109858498
Messenger RNA biogenesis [BR:
pgc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109858498
Spliceosome [BR:
pgc03041
]
Complex B
Other components
Prp19-related factors
109858498
Complex C
109858498
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
Mad3_BUB1_I
TPR_10
PPR
ARM_TT21_C
DHR-2_Lobe_A
NRDE-2
Motif
Other DBs
NCBI-GeneID:
109858498
NCBI-ProteinID:
XP_020291411
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MIERKDDEGNLYTFNEEDLPYEEEILRNPYSVKHWQRYIDHLKNTKSKNLNMVYERALKE
LPGSYKLWYNYLRQRVDQLKGRCITDPLYEDVNNAYERALVFMHKMPRLWMDYCTLMTEQ
CYITRTRQVFDRSLRALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLKRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLKKLIEESATNPTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRV
KLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIEDARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNCKEALKLMHRATTMPARKVAYYDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEEKFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENT
REMCLRFAEMETKLGEVDRARAIYTHCSQICDPRVTSTFWQIWKEFEIRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNATNQVSDVPMDAMRLLDSKIISNTDTPTEPKRGITR
DPNNLTGIKFVRGGVEKDGKPESVNNPDEININIDDDTENDDTEAEIEEDIDIEKQAIPL
QVFGSLKTIEAEDDD
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacgtaaagacgacgaagggaacttatatacgtttaatgaggaggatttgcca
tacgaagaagaaatactacgaaatccgtattcagtaaaacattggcaacgttacattgat
catctgaaaaacacaaaaagtaaaaatttgaacatggtatatgaacgggcattgaaagag
ctaccaggcagttataagttatggtataattaccttcgacaacgagtggaccagttgaaa
ggtcgatgtataacggatccgttatacgaagatgtcaacaatgcctacgaacgggctttg
gtatttatgcataaaatgccacgattatggatggattactgtacactaatgacagaacaa
tgttatataactcgaacgcgtcaagtgtttgatcgctctcttagagcactacctattaca
caacatcatcgcatatggccattgtatattgaatttttgaaaaaacacaatgtctatgaa
actgctgtcagagtatttagaagatatctaaagttggcaccggaagatacagaagaatat
atagaatatttgatatcaattggaagacttgatgaggctgctgtgaaattagcacaaatt
gtcaatcaagatgattttgtgtctaaacatggaaagtcgaatcatcaattatggaatgaa
ttgtgcgatttaatatcgaaaaatccttccaaaataaaatccttaaatgtagatgctatt
atcagaggtggtttaaaacgttacaccgatcagttgggacctttatggaattccctggct
gattattatgttcgaagtggtctttttgaaagggcaagagatatatatgaggaagctata
caaactgttactactgtcagagatttcacacaagtttttgatgcttatgcgcaatttgaa
gagcttagtcttaaaaagctcatagaagaatcagcaactaatcctactgaagaagacgat
ataaaattggaattgagactagcgcgattggaacacctaatggaaaggagactattgtta
ctgaactctgtattattgcgacaaaatccgcacaatgtagcagaatggcataaaagagtg
aaactttatgaaggacaaccacatgagataattaatacatacacagaagcagtgcaaact
gtgcagccacaattggcagttggtaaattgcacacactgtgggtcgcatttggcaagttt
tatgaagaaaatgggcagatagaagatgctagagtggtgtttgaaaaagcaactcatgta
ccgtacaccaaagtagatgatctcgcttcagtgtggtgcgagtgggcagaaatggagatt
agacatggaaattgcaaggaagctctaaaactaatgcatcgtgccactacaatgccagct
agaaaagtagcgtattatgatgaaacggaaacagtccaaatgagattgtataagtctcta
aaagtatggtctatgtatgcggacttggaagaaagctttggaacatttaaaacttgtaaa
gctgtatacgacaaaataattgacttgaaaattgccactcctcaaattattataaattat
ggcttattcctggaagaaaacaactatttcgaagaagcattcagggcatatgaaaaaggc
attgcattatttaaatggccaaacgtttatgacatttggaacacatatcttaccaaattt
ttaaaacgttacggcggcacgaaactagaacgtaccagagatctcttcgaacaatgtttg
gaacattgcccaccaaaatatgccaaagctttatatttgttgtacgcaaaactagaagaa
gaacacggtctagcaagacatgctatgtctgtgtacgaacgagcgacaaatgctgttctc
ccggaagagaaatttgatatgtttaacatatacattaaaaaagctgcggatatatatggt
gtgccaaaaactcgacagatttatgaaaaggccatagaagtgcttaatgatgaaaacacc
agagaaatgtgtttgcggtttgcagaaatggagaccaaattaggagaggtagacagagcg
agagcgatatatacacactgcagtcagatatgcgatccaagagttacatcgactttctgg
caaatttggaaagaattcgaaattaggcatggcaatgaggacacaatgcgcgagatgctt
cgcataaaacgtagcgtgcaggctatgtataacactcaagtgaatatgatgtctgcacaa
atgttgaataatgcaactaatcaagtatcagatgttcccatggacgctatgcgtttattg
gatagtaaaattatatcgaatacagacactccaaccgaacctaagagaggtattacaaga
gatcctaacaatctcactggtattaaattcgtacgtggaggagtagaaaaagatggcaaa
ccagaatctgtaaataatccagacgaaattaacattaatatagatgacgatactgaaaat
gacgatactgaagctgaaattgaagaagatatagatatcgaaaaacaagctataccactt
caagtatttggcagtttaaaaacaatcgaagctgaagatgatgattaa
DBGET
integrated database retrieval system
