Pseudomyrmex gracilis (graceful twig ant): 109859881
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Entry
109859881 CDS
T05003
Name
(RefSeq) probable histone-binding protein Caf1 isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03082
ATP-dependent chromatin remodeling
pgc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109859881
03083 Polycomb repressive complex
109859881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgc03036
]
109859881
Chromosome and associated proteins [BR:
pgc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
109859881
Histone modification proteins
HAT complexes
HATB complex
109859881
HDAC complexes
Sin3A-HDAC complex
109859881
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
109859881
PRC2.2
109859881
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
109859881
Heterochromatin formation proteins
Other heterochromatin formation proteins
109859881
Chromatin remodeling factors
NuRD complex
109859881
NuRF complex
109859881
NuRF complex (fruit fly)
109859881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
Beta-prop_WDR19_1st
WD40_RFWD3
ANAPC4_WD40
eIF2A
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_1st
MIOS_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
109859881
NCBI-ProteinID:
XP_020294161
LinkDB
All DBs
Position
Unknown
AA seq
485 aa
AA seq
DB search
MMGDKDNENISSNVSQSSHDQQSHQRPGNQQSSFHDKNLRHRTKQHSSPSSHNKQSCDLD
PSLYEGFDDAVEERIINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDY
SVHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASHYDNEKGEFGGFGSVSGKIEIEIKI
NHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNGECHPDLRLRGHQKEGY
GLSWNPNLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDVAWHLLHES
LFGSVADDQKLMIWDTRCNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSSEDAED
GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPETPGSEI
ETGGS
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgatgggggacaaagataacgaaaacatcagttctaatgtatctcaatcttctcatgat
caacaatcacatcaacgtcctggcaatcaacaatcatcttttcatgataaaaatcttcga
catcgtaccaaacaacactcttctccatcttctcacaataaacaatcatgtgacttagat
ccttccctctatgagggtttcgacgatgcggtggaagagcgtatcatcaatgaggaatac
aaaatatggaagaaaaatacaccatttctttacgaccttgtgatgacacatgctctggaa
tggccttctctgacagcccaatggctgcctgatgtcaccaggccagaaggcaaagattat
tcagttcataggttgattttaggtactcacacttccgatgaacaaaatcatctactgatt
gcaagcgtccaattgcctaacgaggatgcgcaatttgacgcttctcattacgacaatgag
aaaggcgaatttggtggatttggttctgttagcggcaagattgagattgaaattaagatc
aaccatgaaggagaagtcaacagagcacgatatatgccgcagaatccgtgcgtgattgca
acaaaaactccctcgagcgatgtactcgtttttgattacaccaaacatcccagtaagccc
gatcctaatggagaatgtcatccagatttaagattgcgcggacatcagaaagaaggttac
ggcctctcatggaatccaaatcttaatggatatttacttagcgcatctgatgatcacact
atttgcttgtgggatattaatgccacaccaaaagagaatcgtgttatcgatgcaaaaact
atattcacaggacacacagctgtagttgaggatgttgcttggcatttgttgcacgaatca
ttgtttggttcggttgctgacgatcaaaagctcatgatttgggatactagatgcaacaat
accagcaagccaagtcacactgtcgacgcccacactgccgaggtgaattgcttgagtttc
aacccgtactccgaattcatcctggcaaccggtagcgcagacaaaacagtggctctttgg
gacttacgaaatctcaagttgaaattacattcgttcgaatcacacaaagatgagatcttc
caagttcaatggtctcctcacaatgagacgatattggcgagcagtggtacagacagacga
ttacacgtttgggaccttagcaagatcggtgaagaacagtcttccgaagatgctgaggat
ggcccgcctgagcttttgtttattcacggaggacacactgcaaagatcagtgatttttcg
tggaatccaaacgagccatgggttatatgttcggtttccgaagacaacataatgcaagta
tggcagatggcggagaatatctacaatgatgaggaacccgaaacaccaggaagcgaaatc
gagactggcggctcataa
DBGET
integrated database retrieval system
