Pseudomyrmex gracilis (graceful twig ant): 109860301
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Entry
109860301 CDS
T05003
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pgc
Pseudomyrmex gracilis (graceful twig ant)
Pathway
pgc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109860301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgc03019
]
109860301
03041 Spliceosome [BR:
pgc03041
]
109860301
Messenger RNA biogenesis [BR:
pgc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109860301
Spliceosome [BR:
pgc03041
]
Complex B
Other components
Prp19-related factors
109860301
Complex C
109860301
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
Mad3_BUB1_I
ARM_TT21_C
TPR_10
PPR
DHR-2_Lobe_A
NRDE-2
TIP_N
Motif
Other DBs
NCBI-GeneID:
109860301
NCBI-ProteinID:
XP_020294891
LinkDB
All DBs
Position
Unknown
AA seq
843 aa
AA seq
DB search
MNEEDLPYEEEILRNPYSVKHWQRYIDHLKNTKSKNLNMVYERALKELPGSYKLWYNYLR
QRVDQLKGRCITDPLYEDVNNAYERALVFMHKMPRLWMDYCTLMTEQCYITRTRQVFDRS
LRALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEYIEYLISIERLDKA
AVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAIIRGGLKRYTDQLG
PLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAXFEELSLKKLIEESAN
NPTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRVKLYEGQPHEIINT
YTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIEDARVVFEKATHVPYTKVDDLASVWC
EWAEMEIRHGNCKEALKLMHRATTMPARKVAYYDETETVQLRLYKSLKVWSMYADLEESF
GTFKTCKAVYDKIINLKIATPQIIINYGLFLEENNYFEEAFRAYEKGIALFKWPNVYDIW
NTYLTKFLKRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLEEEHGLARHAMSVYE
RATNAVLPEEKFDMFNIYIKKAADIYGVPKTRQIYEMAIEVLNDENTREMCLRFAEMETK
LGEIDRARVIYTHCSQICDPRVTSNFWQVWKEFEIRHGNEDTMREMLRIKRSVQAMYNTQ
VNMMSAQMLNNASNQVSDVPMDAMRLLDSKITSNTDTQTEPKKAITRDATDLTGGIKFVR
GGIEKDGKPESHVNNPDEINIDMDDDDTENDEAEIEEDIPIEKQAIPSQVFGSLKTTEAE
DDD
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaggaggatttgccgtacgaagaggagatcttacgaaatccatactcggtaaag
cattggcaacgttatattgatcatcttaaaaatacaaaaagtaaaaatttaaatatggta
tatgaacgggcattgaaggagctaccaggcagttataaattgtggtataattatcttcga
caacgagtggatcagttgaaaggtcggtgtataacagatccgttatacgaagatgtcaac
aatgcctatgaacgtgctttggtatttatgcataaaatgccacgattatggatggattac
tgtacactaatgactgaacaatgctatataactcgaacgcgtcaagtgtttgatcgttct
cttagagcactacctataacacaacatcatcgcatatggccattgtatattgagtttttg
aaaaaacacaatgtctatgaaactgctgtcagagtattcaggagatatctaaagttggca
ccggaagatacagaagaatacatagaatatttgatatcaattgaaagacttgacaaggct
gcggtgaaactagcacaaattgtcaaccaagatgattttgtgtctaaacatggaaagtct
aatcatcaactgtggaatgaattgtgcgatttaatatcgaaaaatccttccaaaataaaa
tctttgaatgtagatgctattatcagaggtggtttaaaacgttacacagatcagttggga
cctttatggaattccctggctgattattatgttcgaagtggtctttttgaaagggcaaga
gatatatatgaagaagctatacaaactgttactactgtcagagatttcacacaagttttt
gatgcttatgcgtaatttgaggaacttagtcttaaaaagctcatagaagaatcagcaaat
aatcctactgaagaagacgatataaaattggaattaagattagcgcgacttgaacatcta
atggaaaggagactgttgttactgaactctgtattattgcgacaaaatccacacaatgta
gcagaatggcataaaagagtgaaactttatgaaggacaaccacatgagataattaataca
tatacagaagcagtgcaaactgtgcagccacagttagcagttggtaaattgcacacactg
tgggtcgcatttggcaagttttatgaagaaaatggccaaatagaagatgctagagtggtg
tttgaaaaagcaactcatgttccttacaccaaagtagatgatctcgcttcagtgtggtgt
gaatgggcagaaatggagattagacatggaaattgcaaggaagctctaaaactaatgcat
cgtgccactacaatgccagctagaaaagtagcgtattatgatgaaacggaaacagtccaa
ctgagattgtacaagtctctaaaagtatggtctatgtatgcggacttggaggaaagcttt
ggaacatttaagacttgtaaagctgtatacgacaaaataattaacttgaaaattgccact
ccgcaaattatcataaattatggcttatttctagaagaaaacaactattttgaagaagca
ttcagggcttatgaaaaaggcattgcattatttaaatggccaaacgtttatgacatttgg
aacacatatcttaccaaatttttaaaacgttacggcggcacaaaactagaacgtaccaga
gatctcttcgaacaatgtctggaacattgtccaccaaaatatgccaaagctttatatttg
ttgtacgcaaaactagaagaagaacacggtctagcaagacatgctatgtctgtgtacgaa
cgagcgacaaatgctgtccttccggaagagaaatttgatatgtttaacatatacattaaa
aaagctgcggatatatatggagttccaaaaactcgacagatctatgaaatggccatagag
gtacttaatgatgaaaacaccagagaaatgtgtttgcggtttgcagagatggagaccaaa
ttaggggagattgacagagcaagagtaatatacactcattgtagtcaaatatgcgacccg
agggttacatcaaatttctggcaagtttggaaagaatttgaaattagacatggaaacgag
gacacaatgcgcgagatgcttcgcataaaacgtagcgtgcaggctatgtataacactcaa
gtgaacatgatgtctgcacaaatgttgaataatgcatctaatcaagtatcagatgttccg
atggacgctatgcgtttattggatagtaaaattacatcgaatacagacactcaaaccgaa
cccaagaaagctattacgagagatgctaccgatctcacgggaggtattaaattcgtacgt
ggaggaatagaaaaagatggtaaaccagaatctcacgtgaataatccggatgagattaat
attgatatggacgatgacgatactgaaaatgacgaagccgaaattgaagaagacatacct
atcgaaaaacaagctataccatcgcaagtatttggcagtttgaaaacaaccgaagctgaa
gatgatgattaa
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